Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02418

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
2,698,588	+		MIT1002_02416	0.20	-1.3
2,698,588	+		MIT1002_02416	0.20	-2.1
2,698,596	-		MIT1002_02416	0.22	+0.0
2,698,627	+		MIT1002_02416	0.27	-0.7
2,698,627	+		MIT1002_02416	0.27	+2.3
2,698,627	+		MIT1002_02416	0.27	+0.8
2,698,635	-		MIT1002_02416	0.29	+0.4
2,698,636	+		MIT1002_02416	0.29	-0.3
2,698,682	+		MIT1002_02416	0.37	-0.6
2,698,682	+		MIT1002_02416	0.37	-0.3
2,698,690	-		MIT1002_02416	0.39	+0.0
2,698,690	-		MIT1002_02416	0.39	-0.2
2,698,692	+		MIT1002_02416	0.39	+0.7
2,698,692	+		MIT1002_02416	0.39	+1.1
2,698,692	+		MIT1002_02416	0.39	+0.6
2,698,695	-		MIT1002_02416	0.40	+0.0
2,698,762	+		MIT1002_02416	0.52	-0.3
2,698,782	+		MIT1002_02416	0.56	+0.1
2,698,782	+		MIT1002_02416	0.56	+2.2
2,698,787	+		MIT1002_02416	0.56	+0.6
2,698,787	+		MIT1002_02416	0.56	-1.0
2,698,797	+		MIT1002_02416	0.58	-0.5
2,698,844	-		MIT1002_02416	0.67	-1.3
2,698,889	-		MIT1002_02416	0.75	+0.0
2,698,930	+		MIT1002_02416	0.83	-1.1
2,698,971	+				+0.8
2,698,971	+				-2.1
2,698,979	-				+0.5
2,699,095	-				-0.8
2,699,108	-				-0.4
2,699,129	+				-0.4
2,699,153	+				+0.3
2,699,317	-				-1.1
2,699,347	+		MIT1002_02417	0.32	+0.0
2,699,359	+		MIT1002_02417	0.43	+0.3
2,699,569	+				+0.3
2,699,616	+				+0.3
2,699,749	+		MIT1002_02418	0.17	-1.9
2,699,802	+		MIT1002_02418	0.22	+0.7
2,699,908	+		MIT1002_02418	0.33	+0.2
2,699,911	-		MIT1002_02418	0.34	+0.1
2,699,918	+		MIT1002_02418	0.34	-2.4
2,699,926	-		MIT1002_02418	0.35	+0.6
2,699,936	-		MIT1002_02418	0.36	+0.0
2,699,948	+		MIT1002_02418	0.37	+1.0
2,699,948	+		MIT1002_02418	0.37	-0.8
2,699,948	+		MIT1002_02418	0.37	-0.0
2,699,948	+		MIT1002_02418	0.37	-0.1
2,699,948	+		MIT1002_02418	0.37	+0.9
2,699,956	-		MIT1002_02418	0.38	+0.6
2,699,956	-		MIT1002_02418	0.38	-1.0
2,699,956	-		MIT1002_02418	0.38	+1.1
2,699,957	-		MIT1002_02418	0.38	-0.2
2,700,151	+		MIT1002_02418	0.58	+1.0
2,700,159	-		MIT1002_02418	0.59	+3.3
2,700,201	+		MIT1002_02418	0.63	-0.1
2,700,201	+		MIT1002_02418	0.63	+0.1
2,700,201	+		MIT1002_02418	0.63	-0.8
2,700,208	+		MIT1002_02418	0.64	+0.9
2,700,216	-		MIT1002_02418	0.65	+0.5
2,700,322	+		MIT1002_02418	0.75	-0.2
2,700,535	+				-1.3
2,700,536	+				-1.7
2,700,536	+				-0.5
2,700,762	+		MIT1002_02419	0.26	-0.1
2,700,798	+		MIT1002_02419	0.32	+0.1
2,700,896	-		MIT1002_02419	0.46	-1.1
2,700,908	-		MIT1002_02419	0.48	-0.3
2,700,908	-		MIT1002_02419	0.48	+0.7
2,700,942	-		MIT1002_02419	0.53	-0.5
2,701,037	+		MIT1002_02419	0.68	-0.4
2,701,135	-		MIT1002_02419	0.82	-1.4
2,701,176	+		MIT1002_02419	0.88	+0.5
2,701,184	-		MIT1002_02419	0.90	-0.3
2,701,184	-		MIT1002_02419	0.90	-1.8
2,701,184	-		MIT1002_02419	0.90	+0.8
2,701,208	-				+0.1
2,701,299	+				+0.2
2,701,318	-				+2.4
2,701,340	+				+0.9
2,701,340	+				-0.8
2,701,348	-		MIT1002_02420	0.11	+0.4
2,701,433	+		MIT1002_02420	0.25	+0.2
2,701,441	-		MIT1002_02420	0.27	-1.0
2,701,481	+		MIT1002_02420	0.34	+0.9
2,701,486	+		MIT1002_02420	0.34	-0.8
2,701,489	-		MIT1002_02420	0.35	-0.8
2,701,494	-		MIT1002_02420	0.36	-0.4
2,701,503	-		MIT1002_02420	0.37	+1.8
2,701,523	+		MIT1002_02420	0.41	-0.1
2,701,523	+		MIT1002_02420	0.41	-0.6
2,701,525	+		MIT1002_02420	0.41	+0.3
2,701,559	+		MIT1002_02420	0.47	-1.4
2,701,561	+		MIT1002_02420	0.47	-1.1
2,701,561	+		MIT1002_02420	0.47	-0.2