Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01956

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
2,180,818	-		MIT1002_01955	0.82	+0.1
2,180,833	+		MIT1002_01955	0.82	-1.0
2,180,849	+		MIT1002_01955	0.82	+1.1
2,180,856	+		MIT1002_01955	0.82	-0.7
2,180,856	+		MIT1002_01955	0.82	-2.1
2,180,875	-		MIT1002_01955	0.83	-1.4
2,180,957	-		MIT1002_01955	0.85	-2.0
2,180,957	-		MIT1002_01955	0.85	+0.6
2,180,991	+		MIT1002_01955	0.86	-1.0
2,181,004	+		MIT1002_01955	0.86	-0.4
2,181,004	+		MIT1002_01955	0.86	+0.1
2,181,012	-		MIT1002_01955	0.86	-1.0
2,181,012	-		MIT1002_01955	0.86	-0.5
2,181,018	+		MIT1002_01955	0.86	-0.6
2,181,033	+		MIT1002_01955	0.86	-0.3
2,181,074	+		MIT1002_01955	0.87	-0.4
2,181,082	-		MIT1002_01955	0.88	+0.0
2,181,102	-		MIT1002_01955	0.88	-0.9
2,181,102	-		MIT1002_01955	0.88	-0.0
2,181,139	+		MIT1002_01955	0.89	+1.0
2,181,157	+		MIT1002_01955	0.89	-0.8
2,181,208	+				-0.5
2,181,269	-				+0.4
2,181,422	+				+1.4
2,181,440	-				-0.4
2,181,448	-				-0.3
2,181,453	-				+0.2
2,181,560	+				-0.6
2,181,560	+				-0.2
2,181,568	-				+0.3
2,181,570	+				+2.0
2,181,716	+				-0.3
2,181,755	-				+0.3
2,181,860	+				+0.2
2,181,870	-				+3.0
2,181,925	-		MIT1002_01956	0.16	+0.2
2,182,021	+		MIT1002_01956	0.27	-0.5
2,182,024	+		MIT1002_01956	0.28	+0.7
2,182,032	-		MIT1002_01956	0.29	+0.3
2,182,053	+		MIT1002_01956	0.31	+0.4
2,182,053	+		MIT1002_01956	0.31	-0.2
2,182,053	+		MIT1002_01956	0.31	-0.1
2,182,053	+		MIT1002_01956	0.31	-1.3
2,182,053	+		MIT1002_01956	0.31	-0.5
2,182,053	+		MIT1002_01956	0.31	-1.0
2,182,061	-		MIT1002_01956	0.32	+0.3
2,182,061	-		MIT1002_01956	0.32	+0.6
2,182,061	-		MIT1002_01956	0.32	-1.8
2,182,061	-		MIT1002_01956	0.32	-0.7
2,182,061	-		MIT1002_01956	0.32	-0.3
2,182,061	-		MIT1002_01956	0.32	-0.2
2,182,061	-		MIT1002_01956	0.32	+0.1
2,182,061	-		MIT1002_01956	0.32	+2.3
2,182,061	-		MIT1002_01956	0.32	-0.7
2,182,061	-		MIT1002_01956	0.32	-0.8
2,182,179	+		MIT1002_01956	0.46	+0.8
2,182,325	-		MIT1002_01956	0.63	-0.5
2,182,393	+		MIT1002_01956	0.71	-1.3
2,182,401	-		MIT1002_01956	0.72	+0.3
2,182,403	+		MIT1002_01956	0.72	-0.3
2,182,411	-		MIT1002_01956	0.73	-1.2
2,182,490	-		MIT1002_01956	0.82	-0.4
2,182,579	-				-0.1
2,182,701	+				-0.0
2,182,701	+				-0.2
2,182,701	+				-0.2
2,182,709	-				-0.7
2,182,709	-				+1.7
2,182,831	+				-1.1
2,182,831	+				-1.3
2,182,882	+				+0.4
2,182,895	+				+0.1
2,183,039	-				+0.3
2,183,046	+				+0.6
2,183,206	+				+1.5
2,183,236	-				-0.9
2,183,281	+				-0.8
2,183,296	-				+0.0
2,183,309	+				-1.1
2,183,339	+				+1.3
2,183,344	+				-0.1
2,183,344	+				+0.1
2,183,352	-				+1.0
2,183,352	-				+0.0
2,183,352	-				-0.5
2,183,352	-				+0.5
2,183,482	-		MIT1002_01957	0.10	-0.6
2,183,482	-		MIT1002_01957	0.10	-0.8
2,183,498	+		MIT1002_01957	0.14	-0.2
2,183,506	-		MIT1002_01957	0.15	+0.5
2,183,527	+		MIT1002_01957	0.20	+0.1
2,183,609	+		MIT1002_01957	0.36	-0.2
2,183,633	-		MIT1002_01957	0.41	-1.4
2,183,635	+		MIT1002_01957	0.42	+0.9