Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01464

Experiment: monoculture; Experiment B, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_01463 and MIT1002_01464 are separated by 0 nucleotidesMIT1002_01464 and MIT1002_01465 are separated by 403 nucleotides MIT1002_01463: MIT1002_01463 - Acetyl-coenzyme A synthetase, at 1,616,958 to 1,618,862 _01463 MIT1002_01464: MIT1002_01464 - Ni/Fe-hydrogenase, b-type cytochrome subunit, at 1,618,863 to 1,619,546 _01464 MIT1002_01465: MIT1002_01465 - 4-hydroxy-tetrahydrodipicolinate reductase, at 1,619,950 to 1,620,753 _01465 Position (kb) 1618 1619 1620Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1617.869 kb on + strand, within MIT1002_01463at 1617.869 kb on + strand, within MIT1002_01463at 1617.869 kb on + strand, within MIT1002_01463at 1617.907 kb on - strand, within MIT1002_01463at 1617.924 kb on - strand, within MIT1002_01463at 1617.936 kb on - strand, within MIT1002_01463at 1618.083 kb on - strand, within MIT1002_01463at 1618.107 kb on + strand, within MIT1002_01463at 1618.173 kb on - strand, within MIT1002_01463at 1618.173 kb on - strand, within MIT1002_01463at 1618.195 kb on + strand, within MIT1002_01463at 1618.205 kb on + strand, within MIT1002_01463at 1618.307 kb on - strand, within MIT1002_01463at 1618.381 kb on - strand, within MIT1002_01463at 1618.381 kb on - strand, within MIT1002_01463at 1618.382 kb on - strand, within MIT1002_01463at 1618.514 kb on - strand, within MIT1002_01463at 1618.528 kb on + strand, within MIT1002_01463at 1618.701 kb on + strandat 1618.772 kb on + strandat 1618.806 kb on - strandat 1618.840 kb on - strandat 1618.855 kb on - strandat 1618.855 kb on - strandat 1619.012 kb on - strand, within MIT1002_01464at 1619.045 kb on - strand, within MIT1002_01464at 1619.104 kb on - strand, within MIT1002_01464at 1619.127 kb on - strand, within MIT1002_01464at 1619.127 kb on - strand, within MIT1002_01464at 1619.127 kb on - strand, within MIT1002_01464at 1619.134 kb on + strand, within MIT1002_01464at 1619.196 kb on - strand, within MIT1002_01464at 1619.196 kb on - strand, within MIT1002_01464at 1619.343 kb on - strand, within MIT1002_01464at 1619.343 kb on - strand, within MIT1002_01464at 1619.492 kb on + strandat 1619.560 kb on + strandat 1619.570 kb on - strandat 1619.576 kb on + strandat 1619.757 kb on + strandat 1619.812 kb on + strandat 1619.812 kb on + strandat 1619.820 kb on - strandat 1619.820 kb on - strandat 1619.820 kb on - strandat 1619.820 kb on - strandat 1619.832 kb on + strandat 1619.840 kb on - strandat 1619.916 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4
remove
1,617,869 + MIT1002_01463 0.48 -1.5
1,617,869 + MIT1002_01463 0.48 +1.0
1,617,869 + MIT1002_01463 0.48 -0.8
1,617,907 - MIT1002_01463 0.50 +0.2
1,617,924 - MIT1002_01463 0.51 -0.4
1,617,936 - MIT1002_01463 0.51 +0.8
1,618,083 - MIT1002_01463 0.59 -1.6
1,618,107 + MIT1002_01463 0.60 +1.3
1,618,173 - MIT1002_01463 0.64 +1.1
1,618,173 - MIT1002_01463 0.64 -1.0
1,618,195 + MIT1002_01463 0.65 -1.0
1,618,205 + MIT1002_01463 0.65 +0.3
1,618,307 - MIT1002_01463 0.71 +1.0
1,618,381 - MIT1002_01463 0.75 -1.0
1,618,381 - MIT1002_01463 0.75 -0.2
1,618,382 - MIT1002_01463 0.75 -0.3
1,618,514 - MIT1002_01463 0.82 -1.6
1,618,528 + MIT1002_01463 0.82 -0.7
1,618,701 + +0.3
1,618,772 + +1.4
1,618,806 - +0.9
1,618,840 - -1.6
1,618,855 - -1.2
1,618,855 - -2.0
1,619,012 - MIT1002_01464 0.22 -1.8
1,619,045 - MIT1002_01464 0.27 +1.4
1,619,104 - MIT1002_01464 0.35 +0.2
1,619,127 - MIT1002_01464 0.39 -0.4
1,619,127 - MIT1002_01464 0.39 -0.0
1,619,127 - MIT1002_01464 0.39 +0.9
1,619,134 + MIT1002_01464 0.40 -1.1
1,619,196 - MIT1002_01464 0.49 -1.4
1,619,196 - MIT1002_01464 0.49 -2.4
1,619,343 - MIT1002_01464 0.70 +2.0
1,619,343 - MIT1002_01464 0.70 +0.2
1,619,492 + +0.8
1,619,560 + -1.9
1,619,570 - -0.0
1,619,576 + -0.0
1,619,757 + +1.6
1,619,812 + +2.5
1,619,812 + +1.0
1,619,820 - +0.1
1,619,820 - +0.3
1,619,820 - -0.3
1,619,820 - +0.2
1,619,832 + +0.5
1,619,840 - -0.0
1,619,916 + -4.8

Or see this region's nucleotide sequence