Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01416

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
1,558,376	+		MIT1002_01414	0.74	-0.6
1,558,390	-		MIT1002_01414	0.76	+0.4
1,558,393	+		MIT1002_01414	0.77	+0.3
1,558,571	+				-0.0
1,558,656	-		MIT1002_01415	0.13	+1.4
1,558,693	+		MIT1002_01415	0.19	+0.1
1,558,701	-		MIT1002_01415	0.20	-0.2
1,558,709	-		MIT1002_01415	0.21	-0.8
1,558,727	-		MIT1002_01415	0.23	-1.5
1,558,780	+		MIT1002_01415	0.31	-1.3
1,558,896	+		MIT1002_01415	0.48	+1.3
1,558,914	-		MIT1002_01415	0.50	-0.9
1,558,953	-		MIT1002_01415	0.56	+1.0
1,558,962	+		MIT1002_01415	0.57	-0.9
1,558,979	+		MIT1002_01415	0.60	+1.2
1,558,982	+		MIT1002_01415	0.60	+0.2
1,558,990	+		MIT1002_01415	0.61	-0.5
1,559,194	+				-1.8
1,559,264	-				+1.2
1,559,339	+				+1.1
1,559,349	-				-0.5
1,559,359	-				-1.9
1,559,391	+				+0.2
1,559,391	+				-0.0
1,559,391	+				-1.3
1,559,419	-				+0.3
1,559,551	-		MIT1002_01416	0.11	-0.2
1,559,599	-		MIT1002_01416	0.13	-0.2
1,559,615	+		MIT1002_01416	0.14	-0.3
1,559,623	+		MIT1002_01416	0.14	+1.0
1,559,804	+		MIT1002_01416	0.21	-0.2
1,559,804	+		MIT1002_01416	0.21	-1.0
1,559,812	-		MIT1002_01416	0.22	-0.6
1,559,812	-		MIT1002_01416	0.22	-0.7
1,559,927	+		MIT1002_01416	0.26	-0.4
1,559,935	-		MIT1002_01416	0.27	-1.9
1,560,029	+		MIT1002_01416	0.30	-2.3
1,560,098	+		MIT1002_01416	0.33	+0.7
1,560,098	+		MIT1002_01416	0.33	+0.7
1,560,098	+		MIT1002_01416	0.33	-0.2
1,560,106	-		MIT1002_01416	0.33	+0.2
1,560,106	-		MIT1002_01416	0.33	-0.2
1,560,148	-		MIT1002_01416	0.35	+2.0
1,560,207	-		MIT1002_01416	0.37	+5.2
1,560,304	-		MIT1002_01416	0.41	-0.5
1,560,344	-		MIT1002_01416	0.43	+0.3
1,560,361	-		MIT1002_01416	0.44	+0.0
1,560,416	+		MIT1002_01416	0.46	-1.1
1,560,424	-		MIT1002_01416	0.46	-0.3
1,560,452	+		MIT1002_01416	0.47	-1.0
1,560,662	+		MIT1002_01416	0.55	-2.6
1,560,662	+		MIT1002_01416	0.55	-0.7
1,560,662	+		MIT1002_01416	0.55	-0.4
1,560,662	+		MIT1002_01416	0.55	-1.0
1,560,668	-		MIT1002_01416	0.56	-0.4
1,560,819	+		MIT1002_01416	0.62	-0.3
1,560,819	+		MIT1002_01416	0.62	-0.6
1,560,824	+		MIT1002_01416	0.62	-1.1
1,560,871	-		MIT1002_01416	0.64	+0.3
1,560,909	+		MIT1002_01416	0.65	-0.2
1,560,909	+		MIT1002_01416	0.65	-0.8
1,560,916	+		MIT1002_01416	0.66	-1.4
1,560,963	+		MIT1002_01416	0.67	-0.7
1,560,963	+		MIT1002_01416	0.67	-0.5
1,560,963	+		MIT1002_01416	0.67	-1.7
1,560,963	+		MIT1002_01416	0.67	-0.5
1,560,963	+		MIT1002_01416	0.67	-1.5
1,560,971	-		MIT1002_01416	0.68	-0.2
1,560,971	-		MIT1002_01416	0.68	-0.7
1,561,053	+		MIT1002_01416	0.71	+1.0
1,561,138	+		MIT1002_01416	0.74	-1.0
1,561,146	-		MIT1002_01416	0.75	+0.6
1,561,146	-		MIT1002_01416	0.75	+0.7
1,561,148	+		MIT1002_01416	0.75	+0.1
1,561,189	+		MIT1002_01416	0.76	-0.2
1,561,243	-		MIT1002_01416	0.79	+0.0
1,561,243	-		MIT1002_01416	0.79	-1.1
1,561,275	+		MIT1002_01416	0.80	+0.2
1,561,452	-		MIT1002_01416	0.87	+1.1
1,561,467	-		MIT1002_01416	0.87	-1.5
1,561,472	-		MIT1002_01416	0.88	-1.6
1,561,477	-		MIT1002_01416	0.88	-1.2
1,561,584	+				-0.2
1,561,626	+				+1.7
1,561,626	+				-1.2
1,561,633	-				-1.0
1,561,671	-				-1.3
1,561,767	-				+1.2
1,561,819	-				+0.3
1,561,826	+				+0.8
1,561,838	+				-0.2
1,561,860	-				-0.1
1,561,887	-				+0.8
1,561,898	-				-1.2
1,562,023	+				-0.2
1,562,031	-				+0.4
1,562,088	-				-0.8
1,562,117	+				+0.9
1,562,177	+				+0.6
1,562,177	+				-0.3
1,562,257	+		MIT1002_01417	0.16	+1.2
1,562,264	+		MIT1002_01417	0.17	-0.7
1,562,265	-		MIT1002_01417	0.17	-0.3
1,562,274	+		MIT1002_01417	0.18	-1.0
1,562,303	+		MIT1002_01417	0.21	-1.6
1,562,322	-		MIT1002_01417	0.23	+0.1
1,562,371	+		MIT1002_01417	0.29	-1.2
1,562,398	+		MIT1002_01417	0.32	+0.6
1,562,398	+		MIT1002_01417	0.32	-0.0
1,562,448	+		MIT1002_01417	0.37	-0.0
1,562,448	+		MIT1002_01417	0.37	+0.2
1,562,448	+		MIT1002_01417	0.37	+0.6
1,562,448	+		MIT1002_01417	0.37	-1.0
1,562,453	-		MIT1002_01417	0.38	+3.3
1,562,456	-		MIT1002_01417	0.38	+1.3
1,562,456	-		MIT1002_01417	0.38	-1.1
1,562,478	+		MIT1002_01417	0.41	-1.4
1,562,494	+		MIT1002_01417	0.42	-0.2
1,562,523	-		MIT1002_01417	0.46	-0.4
1,562,523	-		MIT1002_01417	0.46	-0.2
1,562,556	+		MIT1002_01417	0.49	+0.5
1,562,556	+		MIT1002_01417	0.49	+0.0
1,562,564	-		MIT1002_01417	0.50	-1.2
1,562,568	+		MIT1002_01417	0.51	-0.2
1,562,576	-		MIT1002_01417	0.52	-0.9
1,562,595	+		MIT1002_01417	0.54	-0.6
1,562,595	+		MIT1002_01417	0.54	-0.4
1,562,595	+		MIT1002_01417	0.54	-1.9
1,562,595	+		MIT1002_01417	0.54	-1.2
1,562,595	+		MIT1002_01417	0.54	+1.3
1,562,595	+		MIT1002_01417	0.54	-0.8
1,562,603	-		MIT1002_01417	0.55	-2.6
1,562,603	-		MIT1002_01417	0.55	+0.2
1,562,633	+		MIT1002_01417	0.58	+0.6
1,562,633	+		MIT1002_01417	0.58	-1.0
1,562,639	+		MIT1002_01417	0.59	+1.2
1,562,707	-		MIT1002_01417	0.66	+0.8
1,562,738	-		MIT1002_01417	0.70	-0.4