Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01411

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
1,554,433	+		MIT1002_01408	0.78	-1.6
1,554,441	+		MIT1002_01408	0.79	-0.4
1,554,441	+		MIT1002_01408	0.79	+0.1
1,554,441	-		MIT1002_01408	0.79	-1.0
1,554,454	-		MIT1002_01408	0.81	+0.9
1,554,510	-		MIT1002_01408	0.87	-1.4
1,554,511	-		MIT1002_01408	0.87	-1.2
1,554,531	+		MIT1002_01408	0.89	-0.5
1,554,531	+		MIT1002_01408	0.89	-0.1
1,554,538	+				+0.7
1,554,538	+				-0.6
1,554,571	-				-1.2
1,554,590	-				+0.1
1,554,590	-				-0.4
1,554,739	+		MIT1002_01409	0.23	+0.5
1,554,739	+		MIT1002_01409	0.23	-0.0
1,554,741	+		MIT1002_01409	0.24	+0.6
1,554,747	-		MIT1002_01409	0.27	+0.3
1,554,748	-		MIT1002_01409	0.27	+1.5
1,554,749	-		MIT1002_01409	0.27	-0.1
1,554,761	-		MIT1002_01409	0.33	-2.4
1,554,888	+				+1.0
1,554,925	+		MIT1002_01410	0.10	+1.7
1,554,925	+		MIT1002_01410	0.10	-0.1
1,554,925	+		MIT1002_01410	0.10	+0.6
1,554,925	+		MIT1002_01410	0.10	+1.1
1,554,925	+		MIT1002_01410	0.10	+2.8
1,554,925	+		MIT1002_01410	0.10	+1.0
1,554,925	+		MIT1002_01410	0.10	-0.4
1,554,925	+		MIT1002_01410	0.10	+0.5
1,554,933	-		MIT1002_01410	0.14	-0.9
1,554,933	-		MIT1002_01410	0.14	-0.2
1,554,933	-		MIT1002_01410	0.14	-0.3
1,554,933	-		MIT1002_01410	0.14	-0.2
1,554,933	-		MIT1002_01410	0.14	-1.2
1,554,933	-		MIT1002_01410	0.14	+2.3
1,554,956	+		MIT1002_01410	0.26	-0.6
1,554,968	+		MIT1002_01410	0.33	-0.4
1,555,075	+		MIT1002_01410	0.89	+0.1
1,555,084	-				-0.5
1,555,084	-				+1.4
1,555,092	-				+0.2
1,555,102	-				-0.3
1,555,164	+				+0.7
1,555,172	+				+1.8
1,555,276	+				-1.2
1,555,292	-				+0.8
1,555,404	+				+0.5
1,555,429	-				-1.8
1,555,450	-				+0.1
1,555,469	-				+0.2
1,555,536	+		MIT1002_01411	0.16	-0.7
1,555,579	-		MIT1002_01411	0.20	+0.6
1,555,593	+		MIT1002_01411	0.22	-1.4
1,555,612	-		MIT1002_01411	0.24	-0.9
1,555,612	-		MIT1002_01411	0.24	-1.9
1,555,651	-		MIT1002_01411	0.28	+0.6
1,555,667	-		MIT1002_01411	0.30	-2.4
1,555,694	-		MIT1002_01411	0.33	-0.7
1,555,702	+		MIT1002_01411	0.33	-1.4
1,555,742	+		MIT1002_01411	0.38	+0.2
1,555,742	-		MIT1002_01411	0.38	+1.0
1,555,760	+		MIT1002_01411	0.40	+0.5
1,555,823	-		MIT1002_01411	0.46	-0.0
1,555,872	+		MIT1002_01411	0.52	-0.4
1,555,872	+		MIT1002_01411	0.52	+0.8
1,555,920	-		MIT1002_01411	0.57	-2.0
1,555,933	+		MIT1002_01411	0.58	+0.3
1,555,946	-		MIT1002_01411	0.59	-1.6
1,556,091	+		MIT1002_01411	0.75	+2.2
1,556,091	+		MIT1002_01411	0.75	-0.5
1,556,091	+		MIT1002_01411	0.75	+0.6
1,556,091	+		MIT1002_01411	0.75	+0.1
1,556,091	+		MIT1002_01411	0.75	+0.1
1,556,099	-		MIT1002_01411	0.76	-0.3
1,556,111	-		MIT1002_01411	0.77	-0.2
1,556,121	+		MIT1002_01411	0.78	+1.1
1,556,129	-		MIT1002_01411	0.79	+0.2
1,556,129	-		MIT1002_01411	0.79	-0.7
1,556,192	-		MIT1002_01411	0.86	-1.7
1,556,257	-				+0.6
1,556,294	+				-0.6
1,556,345	+				+0.2
1,556,362	-				+0.4
1,556,376	-				+0.5
1,556,385	+				+0.2
1,556,394	+				+0.3
1,556,453	-				-1.5
1,556,539	+		MIT1002_01412	0.19	+0.3
1,556,539	+		MIT1002_01412	0.19	+0.1
1,556,559	+		MIT1002_01412	0.21	-0.0
1,556,567	-		MIT1002_01412	0.22	-0.3
1,556,577	-		MIT1002_01412	0.23	+0.6
1,556,633	+		MIT1002_01412	0.28	+0.1
1,556,644	-		MIT1002_01412	0.30	+0.5
1,556,734	+		MIT1002_01412	0.39	-0.3
1,556,777	+		MIT1002_01412	0.43	-1.0
1,556,784	+		MIT1002_01412	0.44	-0.0
1,556,784	+		MIT1002_01412	0.44	-0.9
1,556,792	-		MIT1002_01412	0.45	+1.6
1,556,792	-		MIT1002_01412	0.45	+0.6
1,556,794	+		MIT1002_01412	0.45	-1.0
1,556,990	+		MIT1002_01412	0.65	-0.3
1,557,015	+		MIT1002_01412	0.68	-1.4
1,557,084	-		MIT1002_01412	0.75	+0.7
1,557,084	-		MIT1002_01412	0.75	+0.1
1,557,108	-		MIT1002_01412	0.77	+2.2
1,557,124	+		MIT1002_01412	0.79	+0.6
1,557,132	-		MIT1002_01412	0.80	-1.6
1,557,132	-		MIT1002_01412	0.80	-1.2
1,557,132	-		MIT1002_01412	0.80	+1.5
1,557,170	+		MIT1002_01412	0.83	-0.7
1,557,214	+		MIT1002_01412	0.88	-1.2
1,557,246	+				-0.6
1,557,287	+				+1.5