Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01314

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
1,458,724	+		MIT1002_01313	0.21	+0.3
1,458,787	-		MIT1002_01313	0.30	-2.1
1,458,901	+		MIT1002_01313	0.46	-0.3
1,458,903	-		MIT1002_01313	0.46	-3.8
1,459,091	-		MIT1002_01313	0.73	+0.1
1,459,128	+		MIT1002_01313	0.78	-2.2
1,459,138	+		MIT1002_01313	0.79	-1.6
1,459,141	+		MIT1002_01313	0.79	-0.8
1,459,149	-		MIT1002_01313	0.81	+0.0
1,459,185	-		MIT1002_01313	0.86	-0.6
1,459,192	-		MIT1002_01313	0.87	+0.9
1,459,252	+				+0.3
1,459,262	+				+0.6
1,459,262	+				-1.3
1,459,262	+				-1.1
1,459,262	+				+0.9
1,459,262	+				+0.4
1,459,262	+				+0.3
1,459,270	-				+1.7
1,459,270	-				-1.8
1,459,450	-				-1.4
1,459,452	+				-0.4
1,459,496	-				-1.4
1,459,541	-				+0.7
1,459,699	-				-1.5
1,459,701	+				-1.3
1,459,701	+				-2.8
1,459,707	-				-1.6
1,459,709	-				-2.1
1,459,772	+				+1.2
1,459,780	+				-0.8
1,459,780	-				-0.4
1,459,787	+				-2.4
1,459,894	+		MIT1002_01314	0.16	-0.4
1,459,898	-		MIT1002_01314	0.17	-1.1
1,459,943	+		MIT1002_01314	0.21	+0.6
1,460,024	-		MIT1002_01314	0.28	-2.6
1,460,035	+		MIT1002_01314	0.29	-1.5
1,460,091	-		MIT1002_01314	0.34	-1.7
1,460,128	+		MIT1002_01314	0.38	+1.3
1,460,157	-		MIT1002_01314	0.40	-1.8
1,460,256	+		MIT1002_01314	0.49	-2.1
1,460,264	-		MIT1002_01314	0.50	-2.0
1,460,264	-		MIT1002_01314	0.50	-1.9
1,460,264	-		MIT1002_01314	0.50	+1.1
1,460,301	-		MIT1002_01314	0.54	-2.0
1,460,423	+		MIT1002_01314	0.65	-1.9
1,460,423	+		MIT1002_01314	0.65	-1.3
1,460,431	-		MIT1002_01314	0.66	-0.8
1,460,431	-		MIT1002_01314	0.66	-1.4
1,460,453	+		MIT1002_01314	0.68	-1.0
1,460,461	-		MIT1002_01314	0.68	-0.3
1,460,461	-		MIT1002_01314	0.68	-0.4
1,460,461	-		MIT1002_01314	0.68	-1.6
1,460,553	+		MIT1002_01314	0.77	-1.4
1,460,705	+				+0.1
1,460,730	+				-1.3
1,460,733	-				-0.9
1,460,765	-				-1.4
1,460,767	+				-0.2
1,460,767	+				-1.1
1,460,767	+				-0.1