Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01290

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
1,424,005	+				+1.4
1,424,024	+				-0.5
1,424,051	+				+1.4
1,424,066	-		MIT1002_01288	0.15	+0.2
1,424,173	-		MIT1002_01288	0.69	+2.4
1,424,189	-		MIT1002_01288	0.77	-0.3
1,424,194	-		MIT1002_01288	0.80	-1.6
1,424,196	+		MIT1002_01288	0.81	+0.1
1,424,198	+		MIT1002_01288	0.82	+0.7
1,424,223	-				+0.1
1,424,358	-		MIT1002_01289	0.16	-0.4
1,424,367	+		MIT1002_01289	0.21	-2.0
1,424,385	+		MIT1002_01289	0.32	+0.9
1,424,427	+		MIT1002_01289	0.58	+0.0
1,424,716	+				+0.7
1,424,734	-				-0.5
1,424,755	-				+0.9
1,424,757	+				-0.5
1,424,762	+				+1.4
1,424,868	+				+0.9
1,424,887	+				-1.1
1,424,930	+				+1.6
1,424,938	-				-1.5
1,425,019	-				-2.5
1,425,032	-				+1.2
1,425,032	-				+1.2
1,425,032	-				-1.2
1,425,082	-				-0.9
1,425,101	-				-0.3
1,425,111	-				+0.1
1,425,224	+				+0.2
1,425,228	+				+0.3
1,425,309	-		MIT1002_01290	0.11	-0.0
1,425,309	-		MIT1002_01290	0.11	-1.1
1,425,322	-		MIT1002_01290	0.12	-3.1
1,425,348	-		MIT1002_01290	0.12	-0.0
1,425,450	-		MIT1002_01290	0.14	-0.5
1,425,535	+		MIT1002_01290	0.16	-0.3
1,425,573	+		MIT1002_01290	0.17	-0.0
1,425,676	-		MIT1002_01290	0.19	-1.3
1,425,706	+		MIT1002_01290	0.20	+1.6
1,425,726	-		MIT1002_01290	0.20	-1.0
1,425,809	-		MIT1002_01290	0.22	-0.6
1,425,818	+		MIT1002_01290	0.22	-1.0
1,425,888	-		MIT1002_01290	0.24	-0.3
1,425,928	-		MIT1002_01290	0.25	-1.7
1,425,997	+		MIT1002_01290	0.26	+0.2
1,426,002	+		MIT1002_01290	0.26	+0.2
1,426,015	-		MIT1002_01290	0.27	-0.7
1,426,015	-		MIT1002_01290	0.27	-0.2
1,426,018	+		MIT1002_01290	0.27	-0.6
1,426,018	+		MIT1002_01290	0.27	-1.6
1,426,024	-		MIT1002_01290	0.27	+3.2
1,426,024	-		MIT1002_01290	0.27	-0.6
1,426,029	-		MIT1002_01290	0.27	-0.2
1,426,040	+		MIT1002_01290	0.27	-0.1
1,426,040	+		MIT1002_01290	0.27	-0.5
1,426,095	+		MIT1002_01290	0.28	-0.7
1,426,095	+		MIT1002_01290	0.28	-1.5
1,426,095	+		MIT1002_01290	0.28	-1.4
1,426,098	-		MIT1002_01290	0.29	-3.5
1,426,098	-		MIT1002_01290	0.29	-0.4
1,426,103	-		MIT1002_01290	0.29	-1.5
1,426,103	-		MIT1002_01290	0.29	-0.3
1,426,103	-		MIT1002_01290	0.29	-0.3
1,426,230	+		MIT1002_01290	0.31	-1.0
1,426,245	-		MIT1002_01290	0.32	-0.5
1,426,263	-		MIT1002_01290	0.32	+0.1
1,426,263	-		MIT1002_01290	0.32	-0.6
1,426,276	-		MIT1002_01290	0.32	-0.8
1,426,338	-		MIT1002_01290	0.34	-1.2
1,426,368	+		MIT1002_01290	0.34	+0.3
1,426,419	-		MIT1002_01290	0.36	-2.1
1,426,530	+		MIT1002_01290	0.38	-1.0
1,426,620	-		MIT1002_01290	0.40	+0.6
1,426,653	-		MIT1002_01290	0.41	-0.8
1,426,680	+		MIT1002_01290	0.41	-1.4
1,426,718	-		MIT1002_01290	0.42	+0.3
1,426,779	+		MIT1002_01290	0.44	+0.7
1,426,779	+		MIT1002_01290	0.44	-0.5
1,426,820	-		MIT1002_01290	0.44	-0.1
1,426,835	+		MIT1002_01290	0.45	+0.8
1,426,843	-		MIT1002_01290	0.45	-1.2
1,426,916	+		MIT1002_01290	0.47	+0.1
1,426,916	+		MIT1002_01290	0.47	-0.9
1,426,916	+		MIT1002_01290	0.47	+0.1
1,426,924	-		MIT1002_01290	0.47	-0.5
1,426,924	-		MIT1002_01290	0.47	-0.4
1,426,924	-		MIT1002_01290	0.47	-0.3
1,426,924	-		MIT1002_01290	0.47	+0.1
1,426,924	-		MIT1002_01290	0.47	+0.9
1,426,939	+		MIT1002_01290	0.47	+0.3
1,426,947	+		MIT1002_01290	0.47	+0.3
1,426,947	-		MIT1002_01290	0.47	-2.0
1,426,949	+		MIT1002_01290	0.47	+0.2
1,426,984	+		MIT1002_01290	0.48	-1.2
1,426,992	-		MIT1002_01290	0.48	-0.4
1,426,994	-		MIT1002_01290	0.48	-0.4
1,427,025	-		MIT1002_01290	0.49	-2.2
1,427,073	+		MIT1002_01290	0.50	+0.5
1,427,073	+		MIT1002_01290	0.50	-1.0
1,427,081	-		MIT1002_01290	0.50	-2.5
1,427,081	-		MIT1002_01290	0.50	+0.8
1,427,119	+		MIT1002_01290	0.51	-1.5
1,427,140	+		MIT1002_01290	0.51	-1.4
1,427,145	+		MIT1002_01290	0.52	-1.2
1,427,148	-		MIT1002_01290	0.52	-0.9
1,427,148	-		MIT1002_01290	0.52	+0.6
1,427,164	+		MIT1002_01290	0.52	-1.1
1,427,172	-		MIT1002_01290	0.52	+0.1
1,427,241	+		MIT1002_01290	0.54	+1.4
1,427,241	+		MIT1002_01290	0.54	-0.1
1,427,275	+		MIT1002_01290	0.54	-2.9
1,427,280	+		MIT1002_01290	0.55	-0.4
1,427,280	+		MIT1002_01290	0.55	-0.6
1,427,288	-		MIT1002_01290	0.55	-3.1
1,427,348	+		MIT1002_01290	0.56	+0.6
1,427,361	+		MIT1002_01290	0.56	+0.4
1,427,399	-		MIT1002_01290	0.57	+1.1
1,427,439	-		MIT1002_01290	0.58	-0.6
1,427,501	-		MIT1002_01290	0.59	-1.1
1,427,526	+		MIT1002_01290	0.60	-1.6
1,427,617	+		MIT1002_01290	0.62	-1.5
1,427,641	+		MIT1002_01290	0.62	-1.0
1,427,641	+		MIT1002_01290	0.62	+0.1
1,427,641	+		MIT1002_01290	0.62	+0.6
1,427,641	+		MIT1002_01290	0.62	-0.9
1,427,649	-		MIT1002_01290	0.63	-1.6
1,427,649	-		MIT1002_01290	0.63	+0.9
1,427,656	+		MIT1002_01290	0.63	+0.8
1,427,697	+		MIT1002_01290	0.64	-2.4
1,427,787	+		MIT1002_01290	0.66	-1.3
1,427,817	+		MIT1002_01290	0.66	-1.9
1,427,932	-		MIT1002_01290	0.69	-0.7
1,428,032	+		MIT1002_01290	0.71	+0.1
1,428,131	+		MIT1002_01290	0.73	-1.2
1,428,224	+		MIT1002_01290	0.75	+3.6
1,428,224	-		MIT1002_01290	0.75	+4.3
1,428,230	-		MIT1002_01290	0.75	-0.5
1,428,247	+		MIT1002_01290	0.76	-1.0
1,428,273	+		MIT1002_01290	0.76	-1.1
1,428,273	+		MIT1002_01290	0.76	+0.3
1,428,344	-		MIT1002_01290	0.78	+2.8
1,428,384	+		MIT1002_01290	0.79	+0.5
1,428,422	-		MIT1002_01290	0.80	-0.8
1,428,482	+		MIT1002_01290	0.81	+0.4
1,428,482	+		MIT1002_01290	0.81	-0.0
1,428,482	+		MIT1002_01290	0.81	-1.0
1,428,490	-		MIT1002_01290	0.81	+1.2
1,428,505	+		MIT1002_01290	0.81	+0.3
1,428,560	+		MIT1002_01290	0.83	-0.9
1,428,628	-		MIT1002_01290	0.84	+0.2
1,428,673	-		MIT1002_01290	0.85	-0.8
1,428,673	-		MIT1002_01290	0.85	+0.1
1,428,696	+		MIT1002_01290	0.86	-0.4
1,428,727	+		MIT1002_01290	0.86	-0.8
1,428,727	+		MIT1002_01290	0.86	-0.7
1,428,727	+		MIT1002_01290	0.86	-0.4
1,428,735	-		MIT1002_01290	0.87	-0.1
1,428,735	-		MIT1002_01290	0.87	-2.2
1,428,745	-		MIT1002_01290	0.87	-2.1
1,429,022	-				-1.6
1,429,161	-				-1.2
1,429,177	+				-0.6
1,429,199	+				-0.4
1,429,199	+				-2.6
1,429,199	+				-1.1
1,429,199	+				-0.8
1,429,199	+				+0.6
1,429,199	+				-1.1
1,429,199	+				+1.0
1,429,199	+				-0.8
1,429,207	-				+0.4
1,429,207	-				-1.2
1,429,207	-				-1.6
1,429,207	-				-1.5
1,429,207	-				-1.5
1,429,207	-				+2.8
1,429,346	+				-1.4
1,429,348	+				-0.5
1,429,356	+				-1.2
1,429,356	+				-1.2
1,429,356	-				-0.3
1,429,357	-				+0.0
1,429,369	-				-0.3
1,429,571	+				+0.4
1,429,664	+				+3.3
1,429,680	+				-0.9
1,429,685	+				-1.1
1,429,723	-				+1.0
1,429,733	+				+0.6
1,429,831	+				+0.3
1,429,954	+		MIT1002_01291	0.14	+0.4
1,429,954	+		MIT1002_01291	0.14	-0.3
1,429,954	+		MIT1002_01291	0.14	-0.6
1,430,035	-		MIT1002_01291	0.17	-0.3
1,430,125	+		MIT1002_01291	0.20	-0.1
1,430,185	-		MIT1002_01291	0.22	-2.3
1,430,205	+		MIT1002_01291	0.23	-0.2
1,430,215	+		MIT1002_01291	0.23	-0.9
1,430,215	+		MIT1002_01291	0.23	+0.0
1,430,215	+		MIT1002_01291	0.23	+0.4