Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01126

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
1,237,970	-		MIT1002_01125	0.52	-0.1
1,238,036	+		MIT1002_01125	0.55	+0.1
1,238,074	+		MIT1002_01125	0.57	-1.7
1,238,074	+		MIT1002_01125	0.57	-0.3
1,238,074	+		MIT1002_01125	0.57	-0.7
1,238,082	-		MIT1002_01125	0.57	+1.0
1,238,082	-		MIT1002_01125	0.57	+2.0
1,238,092	-		MIT1002_01125	0.57	-0.3
1,238,092	-		MIT1002_01125	0.57	+0.8
1,238,105	+		MIT1002_01125	0.58	+1.3
1,238,113	-		MIT1002_01125	0.58	-0.2
1,238,114	-		MIT1002_01125	0.58	-0.0
1,238,139	+		MIT1002_01125	0.60	+0.5
1,238,182	-		MIT1002_01125	0.62	-0.5
1,238,191	-		MIT1002_01125	0.62	-1.4
1,238,197	-		MIT1002_01125	0.62	+1.6
1,238,320	-		MIT1002_01125	0.68	-0.8
1,238,334	-		MIT1002_01125	0.69	-1.3
1,238,391	+		MIT1002_01125	0.72	-0.6
1,238,398	-		MIT1002_01125	0.72	-1.9
1,238,413	-		MIT1002_01125	0.73	+0.1
1,238,445	-		MIT1002_01125	0.74	-2.6
1,238,448	-		MIT1002_01125	0.75	-0.3
1,238,485	+		MIT1002_01125	0.76	+0.4
1,238,593	+		MIT1002_01125	0.82	-1.9
1,238,617	-		MIT1002_01125	0.83	+0.8
1,238,633	+		MIT1002_01125	0.83	+0.4
1,238,652	+		MIT1002_01125	0.84	+1.2
1,238,652	-		MIT1002_01125	0.84	-0.0
1,238,762	+		MIT1002_01125	0.90	-0.2
1,238,770	-				-0.1
1,238,823	+				-1.1
1,238,849	+				+1.0
1,238,876	+				-0.6
1,238,938	-				+0.9
1,239,009	-				-0.5
1,239,063	+				+0.0
1,239,320	+		MIT1002_01126	0.27	-0.1
1,239,334	+		MIT1002_01126	0.28	-0.0
1,239,342	-		MIT1002_01126	0.28	-1.2
1,239,370	+		MIT1002_01126	0.31	-0.5
1,239,402	+		MIT1002_01126	0.33	+0.3
1,239,412	-		MIT1002_01126	0.34	+1.6
1,239,497	+		MIT1002_01126	0.40	+0.2
1,239,497	+		MIT1002_01126	0.40	-0.7
1,239,621	+		MIT1002_01126	0.49	+0.7
1,239,634	+		MIT1002_01126	0.50	-0.2
1,239,676	+		MIT1002_01126	0.54	+0.2
1,239,699	+		MIT1002_01126	0.55	-0.8
1,239,706	-		MIT1002_01126	0.56	+2.4
1,239,768	+		MIT1002_01126	0.61	-2.3
1,239,785	-		MIT1002_01126	0.62	+0.1
1,239,842	+		MIT1002_01126	0.66	+0.1
1,239,844	-		MIT1002_01126	0.66	+0.9
1,239,927	-		MIT1002_01126	0.73	+0.7
1,239,976	-		MIT1002_01126	0.76	+2.3
1,240,005	-		MIT1002_01126	0.78	+0.5
1,240,013	+		MIT1002_01126	0.79	-1.1
1,240,013	+		MIT1002_01126	0.79	+0.3
1,240,013	+		MIT1002_01126	0.79	+3.4
1,240,013	+		MIT1002_01126	0.79	+1.0
1,240,021	-		MIT1002_01126	0.80	+0.2
1,240,021	-		MIT1002_01126	0.80	+0.3
1,240,021	-		MIT1002_01126	0.80	-0.1
1,240,021	-		MIT1002_01126	0.80	-0.1
1,240,021	-		MIT1002_01126	0.80	-1.7
1,240,038	+		MIT1002_01126	0.81	+0.7
1,240,091	+		MIT1002_01126	0.85	+0.5
1,240,103	-		MIT1002_01126	0.86	-2.5
1,240,164	+				+0.6
1,240,172	-				-1.2
1,240,223	+				+0.4
1,240,233	+				+1.2
1,240,233	+				+0.5
1,240,233	+				-0.1
1,240,241	-				-0.2
1,240,286	+				+0.9
1,240,286	+				+0.9
1,240,294	-				-0.7
1,240,318	-				-0.1
1,240,326	+				-0.1
1,240,333	-				-1.3
1,240,469	+		MIT1002_01127	0.13	-0.4
1,240,476	+		MIT1002_01127	0.15	+0.6
1,240,477	-		MIT1002_01127	0.15	-0.7
1,240,493	-		MIT1002_01127	0.18	+1.4
1,240,660	-		MIT1002_01127	0.55	-0.4
1,240,660	-		MIT1002_01127	0.55	-0.5
1,240,665	-		MIT1002_01127	0.56	+0.1
1,240,667	+		MIT1002_01127	0.56	+0.8
1,240,675	-		MIT1002_01127	0.58	-0.1
1,240,677	+		MIT1002_01127	0.58	-0.5
1,240,685	-		MIT1002_01127	0.60	+1.4
1,240,707	-		MIT1002_01127	0.65	-0.3
1,240,747	-		MIT1002_01127	0.74	-1.2
1,240,810	-		MIT1002_01127	0.87	-0.6
1,240,865	-				-0.2
1,240,875	+				-1.4
1,240,875	+				+0.1
1,240,934	+				+2.6
1,240,979	+				+0.9
1,240,979	+				-1.0
1,240,987	-				+2.9