Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00929

Experiment: monoculture; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00927 and MIT1002_00928 are separated by 154 nucleotidesMIT1002_00928 and MIT1002_00929 are separated by 48 nucleotidesMIT1002_00929 and MIT1002_00930 are separated by 312 nucleotidesMIT1002_00930 and MIT1002_00931 are separated by 152 nucleotides MIT1002_00927: MIT1002_00927 - Cytochrome c551 peroxidase precursor, at 1,029,345 to 1,030,475 _00927 MIT1002_00928: MIT1002_00928 - hypothetical protein, at 1,030,630 to 1,030,959 _00928 MIT1002_00929: MIT1002_00929 - hypothetical protein, at 1,031,008 to 1,031,667 _00929 MIT1002_00930: MIT1002_00930 - hypothetical protein, at 1,031,980 to 1,032,306 _00930 MIT1002_00931: MIT1002_00931 - two-component response regulator, at 1,032,459 to 1,033,220 _00931 Position (kb) 1031 1032Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1030.015 kb on - strand, within MIT1002_00927at 1030.065 kb on + strand, within MIT1002_00927at 1030.065 kb on + strand, within MIT1002_00927at 1030.073 kb on - strand, within MIT1002_00927at 1030.073 kb on - strand, within MIT1002_00927at 1030.073 kb on - strand, within MIT1002_00927at 1030.073 kb on - strand, within MIT1002_00927at 1030.092 kb on - strand, within MIT1002_00927at 1030.113 kb on + strand, within MIT1002_00927at 1030.121 kb on - strand, within MIT1002_00927at 1030.129 kb on + strand, within MIT1002_00927at 1030.129 kb on + strand, within MIT1002_00927at 1030.129 kb on + strand, within MIT1002_00927at 1030.129 kb on + strand, within MIT1002_00927at 1030.137 kb on - strand, within MIT1002_00927at 1030.137 kb on - strand, within MIT1002_00927at 1030.139 kb on + strand, within MIT1002_00927at 1030.139 kb on + strand, within MIT1002_00927at 1030.214 kb on - strand, within MIT1002_00927at 1030.244 kb on - strand, within MIT1002_00927at 1030.246 kb on + strand, within MIT1002_00927at 1030.254 kb on - strand, within MIT1002_00927at 1030.254 kb on - strand, within MIT1002_00927at 1030.254 kb on - strand, within MIT1002_00927at 1030.342 kb on + strand, within MIT1002_00927at 1030.343 kb on + strand, within MIT1002_00927at 1030.343 kb on + strand, within MIT1002_00927at 1030.343 kb on + strand, within MIT1002_00927at 1030.343 kb on + strand, within MIT1002_00927at 1030.350 kb on - strand, within MIT1002_00927at 1030.426 kb on + strandat 1030.504 kb on + strandat 1030.704 kb on + strand, within MIT1002_00928at 1030.748 kb on + strand, within MIT1002_00928at 1030.748 kb on + strand, within MIT1002_00928at 1030.748 kb on + strand, within MIT1002_00928at 1030.756 kb on - strand, within MIT1002_00928at 1030.756 kb on - strand, within MIT1002_00928at 1030.882 kb on - strand, within MIT1002_00928at 1030.939 kb on + strandat 1031.013 kb on - strandat 1031.050 kb on - strandat 1031.072 kb on + strandat 1031.079 kb on + strand, within MIT1002_00929at 1031.126 kb on + strand, within MIT1002_00929at 1031.176 kb on - strand, within MIT1002_00929at 1031.190 kb on + strand, within MIT1002_00929at 1031.198 kb on - strand, within MIT1002_00929at 1031.203 kb on - strand, within MIT1002_00929at 1031.237 kb on + strand, within MIT1002_00929at 1031.256 kb on + strand, within MIT1002_00929at 1031.305 kb on - strand, within MIT1002_00929at 1031.377 kb on + strand, within MIT1002_00929at 1031.377 kb on + strand, within MIT1002_00929at 1031.385 kb on - strand, within MIT1002_00929at 1031.385 kb on - strand, within MIT1002_00929at 1031.437 kb on + strand, within MIT1002_00929at 1031.437 kb on + strand, within MIT1002_00929at 1031.439 kb on + strand, within MIT1002_00929at 1031.445 kb on - strand, within MIT1002_00929at 1031.456 kb on + strand, within MIT1002_00929at 1031.464 kb on - strand, within MIT1002_00929at 1031.545 kb on + strand, within MIT1002_00929at 1031.575 kb on - strand, within MIT1002_00929at 1031.611 kb on + strandat 1031.621 kb on + strandat 1031.658 kb on + strandat 1031.659 kb on + strandat 1031.666 kb on - strandat 1031.798 kb on - strandat 1031.831 kb on - strandat 1031.866 kb on - strandat 1031.866 kb on - strandat 1031.873 kb on + strandat 1031.873 kb on + strandat 1031.996 kb on + strandat 1032.004 kb on - strandat 1032.004 kb on - strandat 1032.107 kb on - strand, within MIT1002_00930at 1032.107 kb on - strand, within MIT1002_00930at 1032.107 kb on - strand, within MIT1002_00930at 1032.189 kb on + strand, within MIT1002_00930at 1032.192 kb on - strand, within MIT1002_00930at 1032.215 kb on + strand, within MIT1002_00930at 1032.275 kb on - strandat 1032.380 kb on + strandat 1032.380 kb on + strandat 1032.380 kb on + strandat 1032.380 kb on + strandat 1032.388 kb on - strandat 1032.388 kb on - strandat 1032.388 kb on - strandat 1032.388 kb on - strandat 1032.403 kb on + strandat 1032.412 kb on + strandat 1032.412 kb on + strandat 1032.420 kb on - strandat 1032.542 kb on + strand, within MIT1002_00931at 1032.542 kb on + strand, within MIT1002_00931at 1032.542 kb on + strand, within MIT1002_00931at 1032.550 kb on - strand, within MIT1002_00931at 1032.550 kb on - strand, within MIT1002_00931at 1032.550 kb on - strand, within MIT1002_00931at 1032.550 kb on - strand, within MIT1002_00931at 1032.559 kb on + strand, within MIT1002_00931at 1032.571 kb on + strand, within MIT1002_00931at 1032.587 kb on + strand, within MIT1002_00931at 1032.607 kb on - strand, within MIT1002_00931at 1032.607 kb on - strand, within MIT1002_00931at 1032.613 kb on + strand, within MIT1002_00931at 1032.632 kb on - strand, within MIT1002_00931

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4
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1,030,015 - MIT1002_00927 0.59 -0.6
1,030,065 + MIT1002_00927 0.64 +0.0
1,030,065 + MIT1002_00927 0.64 -0.3
1,030,073 - MIT1002_00927 0.64 -0.1
1,030,073 - MIT1002_00927 0.64 +1.3
1,030,073 - MIT1002_00927 0.64 +0.1
1,030,073 - MIT1002_00927 0.64 +0.4
1,030,092 - MIT1002_00927 0.66 -0.1
1,030,113 + MIT1002_00927 0.68 +1.2
1,030,121 - MIT1002_00927 0.69 -0.2
1,030,129 + MIT1002_00927 0.69 -0.3
1,030,129 + MIT1002_00927 0.69 -0.2
1,030,129 + MIT1002_00927 0.69 -0.2
1,030,129 + MIT1002_00927 0.69 +0.4
1,030,137 - MIT1002_00927 0.70 -0.1
1,030,137 - MIT1002_00927 0.70 +0.3
1,030,139 + MIT1002_00927 0.70 -1.1
1,030,139 + MIT1002_00927 0.70 -0.1
1,030,214 - MIT1002_00927 0.77 -1.4
1,030,244 - MIT1002_00927 0.79 -2.7
1,030,246 + MIT1002_00927 0.80 +0.2
1,030,254 - MIT1002_00927 0.80 -0.4
1,030,254 - MIT1002_00927 0.80 -2.0
1,030,254 - MIT1002_00927 0.80 +0.5
1,030,342 + MIT1002_00927 0.88 +1.2
1,030,343 + MIT1002_00927 0.88 -0.1
1,030,343 + MIT1002_00927 0.88 +0.9
1,030,343 + MIT1002_00927 0.88 +1.1
1,030,343 + MIT1002_00927 0.88 -0.7
1,030,350 - MIT1002_00927 0.89 +0.3
1,030,426 + +0.6
1,030,504 + -0.3
1,030,704 + MIT1002_00928 0.22 -0.5
1,030,748 + MIT1002_00928 0.36 -0.1
1,030,748 + MIT1002_00928 0.36 +0.0
1,030,748 + MIT1002_00928 0.36 -0.6
1,030,756 - MIT1002_00928 0.38 -0.2
1,030,756 - MIT1002_00928 0.38 +0.4
1,030,882 - MIT1002_00928 0.76 -1.8
1,030,939 + -0.2
1,031,013 - +1.1
1,031,050 - +0.1
1,031,072 + +1.0
1,031,079 + MIT1002_00929 0.11 -0.2
1,031,126 + MIT1002_00929 0.18 +0.3
1,031,176 - MIT1002_00929 0.25 -0.0
1,031,190 + MIT1002_00929 0.28 +0.3
1,031,198 - MIT1002_00929 0.29 -0.7
1,031,203 - MIT1002_00929 0.30 +0.3
1,031,237 + MIT1002_00929 0.35 +1.6
1,031,256 + MIT1002_00929 0.38 -0.2
1,031,305 - MIT1002_00929 0.45 +0.4
1,031,377 + MIT1002_00929 0.56 -1.5
1,031,377 + MIT1002_00929 0.56 +0.3
1,031,385 - MIT1002_00929 0.57 -1.5
1,031,385 - MIT1002_00929 0.57 -0.1
1,031,437 + MIT1002_00929 0.65 +1.6
1,031,437 + MIT1002_00929 0.65 +0.7
1,031,439 + MIT1002_00929 0.65 -1.7
1,031,445 - MIT1002_00929 0.66 -2.0
1,031,456 + MIT1002_00929 0.68 -0.2
1,031,464 - MIT1002_00929 0.69 +0.7
1,031,545 + MIT1002_00929 0.81 +0.4
1,031,575 - MIT1002_00929 0.86 +1.0
1,031,611 + -0.9
1,031,621 + +0.1
1,031,658 + +0.4
1,031,659 + +0.2
1,031,666 - -0.7
1,031,798 - -0.2
1,031,831 - +1.1
1,031,866 - -0.5
1,031,866 - -2.2
1,031,873 + -0.7
1,031,873 + +0.6
1,031,996 + +0.4
1,032,004 - +0.8
1,032,004 - +0.6
1,032,107 - MIT1002_00930 0.39 +0.0
1,032,107 - MIT1002_00930 0.39 +0.8
1,032,107 - MIT1002_00930 0.39 +0.7
1,032,189 + MIT1002_00930 0.64 +1.2
1,032,192 - MIT1002_00930 0.65 -0.9
1,032,215 + MIT1002_00930 0.72 -0.7
1,032,275 - -1.1
1,032,380 + -0.1
1,032,380 + +0.3
1,032,380 + +0.3
1,032,380 + -0.8
1,032,388 - -2.3
1,032,388 - +0.3
1,032,388 - -0.5
1,032,388 - +0.1
1,032,403 + -0.5
1,032,412 + +0.2
1,032,412 + +2.3
1,032,420 - -0.2
1,032,542 + MIT1002_00931 0.11 -0.6
1,032,542 + MIT1002_00931 0.11 -0.5
1,032,542 + MIT1002_00931 0.11 -0.8
1,032,550 - MIT1002_00931 0.12 +0.6
1,032,550 - MIT1002_00931 0.12 +0.1
1,032,550 - MIT1002_00931 0.12 +0.6
1,032,550 - MIT1002_00931 0.12 +3.1
1,032,559 + MIT1002_00931 0.13 +0.5
1,032,571 + MIT1002_00931 0.15 -0.3
1,032,587 + MIT1002_00931 0.17 +0.9
1,032,607 - MIT1002_00931 0.19 +0.8
1,032,607 - MIT1002_00931 0.19 -0.8
1,032,613 + MIT1002_00931 0.20 +2.0
1,032,632 - MIT1002_00931 0.23 -0.7

Or see this region's nucleotide sequence