Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00873

Experiment: monoculture; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00872 and MIT1002_00873 are separated by 187 nucleotidesMIT1002_00873 and MIT1002_00874 are separated by 209 nucleotides MIT1002_00872: MIT1002_00872 - Polyphosphate kinase, at 962,018 to 964,090 _00872 MIT1002_00873: MIT1002_00873 - formyltetrahydrofolate deformylase, at 964,278 to 964,784 _00873 MIT1002_00874: MIT1002_00874 - Phosphate transport system permease protein PstC, at 964,994 to 967,171 _00874 Position (kb) 964 965Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 963.322 kb on + strand, within MIT1002_00872at 963.330 kb on + strand, within MIT1002_00872at 963.330 kb on - strand, within MIT1002_00872at 963.560 kb on - strand, within MIT1002_00872at 963.649 kb on - strand, within MIT1002_00872at 963.831 kb on + strand, within MIT1002_00872at 963.873 kb on - strand, within MIT1002_00872at 963.922 kb on + strandat 964.070 kb on + strandat 964.070 kb on + strandat 964.256 kb on - strandat 964.322 kb on + strandat 964.322 kb on + strandat 964.340 kb on - strand, within MIT1002_00873at 964.340 kb on - strand, within MIT1002_00873at 964.437 kb on + strand, within MIT1002_00873at 964.473 kb on + strand, within MIT1002_00873at 964.481 kb on - strand, within MIT1002_00873at 964.487 kb on - strand, within MIT1002_00873at 964.514 kb on - strand, within MIT1002_00873at 964.591 kb on - strand, within MIT1002_00873at 964.614 kb on - strand, within MIT1002_00873at 964.659 kb on + strand, within MIT1002_00873at 964.680 kb on + strand, within MIT1002_00873at 964.686 kb on - strand, within MIT1002_00873at 964.693 kb on - strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.725 kb on - strand, within MIT1002_00873at 964.744 kb on + strandat 964.757 kb on - strandat 964.772 kb on - strandat 964.792 kb on + strandat 964.844 kb on - strandat 964.858 kb on - strandat 964.894 kb on + strandat 964.910 kb on + strandat 964.918 kb on + strandat 964.920 kb on + strandat 964.920 kb on + strandat 964.926 kb on - strandat 964.926 kb on - strandat 964.926 kb on - strandat 965.005 kb on - strandat 965.060 kb on - strandat 965.126 kb on + strandat 965.137 kb on + strandat 965.145 kb on - strandat 965.145 kb on - strandat 965.186 kb on - strandat 965.223 kb on - strand, within MIT1002_00874at 965.269 kb on - strand, within MIT1002_00874at 965.332 kb on + strand, within MIT1002_00874at 965.433 kb on + strand, within MIT1002_00874at 965.473 kb on + strand, within MIT1002_00874at 965.481 kb on + strand, within MIT1002_00874at 965.497 kb on + strand, within MIT1002_00874at 965.497 kb on + strand, within MIT1002_00874at 965.497 kb on + strand, within MIT1002_00874at 965.497 kb on + strand, within MIT1002_00874at 965.497 kb on + strand, within MIT1002_00874at 965.530 kb on + strand, within MIT1002_00874at 965.532 kb on + strand, within MIT1002_00874at 965.537 kb on + strand, within MIT1002_00874at 965.540 kb on - strand, within MIT1002_00874at 965.540 kb on - strand, within MIT1002_00874at 965.570 kb on + strand, within MIT1002_00874at 965.570 kb on + strand, within MIT1002_00874at 965.598 kb on + strand, within MIT1002_00874at 965.613 kb on + strand, within MIT1002_00874at 965.613 kb on + strand, within MIT1002_00874at 965.621 kb on - strand, within MIT1002_00874at 965.692 kb on - strand, within MIT1002_00874at 965.764 kb on + strand, within MIT1002_00874

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4
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963,322 + MIT1002_00872 0.63 -1.3
963,330 + MIT1002_00872 0.63 -1.8
963,330 - MIT1002_00872 0.63 -3.4
963,560 - MIT1002_00872 0.74 -1.3
963,649 - MIT1002_00872 0.79 +0.1
963,831 + MIT1002_00872 0.87 -2.1
963,873 - MIT1002_00872 0.89 -1.1
963,922 + -0.6
964,070 + -1.0
964,070 + -0.1
964,256 - +0.4
964,322 + -0.5
964,322 + +0.6
964,340 - MIT1002_00873 0.12 +0.3
964,340 - MIT1002_00873 0.12 +0.3
964,437 + MIT1002_00873 0.31 +1.0
964,473 + MIT1002_00873 0.38 -1.3
964,481 - MIT1002_00873 0.40 +1.0
964,487 - MIT1002_00873 0.41 -0.0
964,514 - MIT1002_00873 0.47 -0.3
964,591 - MIT1002_00873 0.62 -0.6
964,614 - MIT1002_00873 0.66 -0.3
964,659 + MIT1002_00873 0.75 -0.1
964,680 + MIT1002_00873 0.79 -0.7
964,686 - MIT1002_00873 0.80 -0.7
964,693 - MIT1002_00873 0.82 +0.3
964,717 + MIT1002_00873 0.87 -0.7
964,717 + MIT1002_00873 0.87 -1.1
964,717 + MIT1002_00873 0.87 -0.0
964,717 + MIT1002_00873 0.87 +1.1
964,725 - MIT1002_00873 0.88 +0.3
964,744 + +0.0
964,757 - +0.2
964,772 - +1.9
964,792 + -0.7
964,844 - +1.0
964,858 - +0.3
964,894 + +1.0
964,910 + +0.0
964,918 + -0.1
964,920 + -0.8
964,920 + +0.3
964,926 - -0.6
964,926 - -1.3
964,926 - +0.0
965,005 - -0.4
965,060 - -2.8
965,126 + +0.2
965,137 + -0.8
965,145 - -3.3
965,145 - -2.2
965,186 - -1.8
965,223 - MIT1002_00874 0.11 -0.3
965,269 - MIT1002_00874 0.13 -0.2
965,332 + MIT1002_00874 0.16 -1.0
965,433 + MIT1002_00874 0.20 +0.3
965,473 + MIT1002_00874 0.22 -0.4
965,481 + MIT1002_00874 0.22 -2.1
965,497 + MIT1002_00874 0.23 +1.0
965,497 + MIT1002_00874 0.23 -0.3
965,497 + MIT1002_00874 0.23 -2.0
965,497 + MIT1002_00874 0.23 +1.2
965,497 + MIT1002_00874 0.23 -0.5
965,530 + MIT1002_00874 0.25 +0.5
965,532 + MIT1002_00874 0.25 -2.2
965,537 + MIT1002_00874 0.25 -0.8
965,540 - MIT1002_00874 0.25 +0.2
965,540 - MIT1002_00874 0.25 +1.6
965,570 + MIT1002_00874 0.26 -1.3
965,570 + MIT1002_00874 0.26 -2.6
965,598 + MIT1002_00874 0.28 -0.8
965,613 + MIT1002_00874 0.28 -2.5
965,613 + MIT1002_00874 0.28 -1.0
965,621 - MIT1002_00874 0.29 -1.1
965,692 - MIT1002_00874 0.32 -1.8
965,764 + MIT1002_00874 0.35 +1.1

Or see this region's nucleotide sequence