Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00752 and MIT1002_00753 are separated by 16 nucleotides MIT1002_00753 and MIT1002_00754 are separated by 228 nucleotides MIT1002_00754 and MIT1002_00755 are separated by 25 nucleotides
MIT1002_00752: MIT1002_00752 - Phosphate regulon sensor protein PhoR, at 824,927 to 826,228
_00752
MIT1002_00753: MIT1002_00753 - Phosphate-binding protein PstS 1 precursor, at 826,245 to 827,276
_00753
MIT1002_00754: MIT1002_00754 - hypothetical protein, at 827,505 to 827,675
_00754
MIT1002_00755: MIT1002_00755 - hypothetical protein, at 827,701 to 830,481
_00755
Position (kb) 826
827
828 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 825.928 kb on + strand, within MIT1002_00752 at 825.936 kb on - strand, within MIT1002_00752 at 825.936 kb on - strand, within MIT1002_00752 at 826.014 kb on + strand, within MIT1002_00752 at 826.022 kb on - strand, within MIT1002_00752 at 826.106 kb on - strand at 826.223 kb on + strand at 826.223 kb on + strand at 826.230 kb on - strand at 826.230 kb on - strand at 826.245 kb on + strand at 826.286 kb on - strand at 826.325 kb on - strand at 826.325 kb on - strand at 826.325 kb on - strand at 826.531 kb on + strand, within MIT1002_00753 at 826.588 kb on - strand, within MIT1002_00753 at 826.634 kb on + strand, within MIT1002_00753 at 826.642 kb on - strand, within MIT1002_00753 at 826.731 kb on - strand, within MIT1002_00753 at 826.731 kb on - strand, within MIT1002_00753 at 826.787 kb on - strand, within MIT1002_00753 at 826.812 kb on - strand, within MIT1002_00753 at 826.844 kb on - strand, within MIT1002_00753 at 827.027 kb on + strand, within MIT1002_00753 at 827.027 kb on + strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.058 kb on - strand, within MIT1002_00753 at 827.141 kb on + strand, within MIT1002_00753 at 827.141 kb on + strand, within MIT1002_00753 at 827.149 kb on - strand, within MIT1002_00753 at 827.149 kb on - strand, within MIT1002_00753 at 827.250 kb on + strand at 827.280 kb on + strand at 827.285 kb on + strand at 827.293 kb on - strand at 827.362 kb on + strand at 827.557 kb on - strand, within MIT1002_00754 at 827.653 kb on - strand, within MIT1002_00754 at 827.688 kb on - strand at 827.732 kb on - strand at 827.758 kb on + strand at 827.802 kb on - strand at 827.880 kb on - strand at 827.880 kb on - strand at 827.888 kb on + strand at 827.930 kb on + strand at 827.971 kb on - strand at 828.021 kb on - strand, within MIT1002_00755 at 828.048 kb on + strand, within MIT1002_00755 at 828.056 kb on - strand, within MIT1002_00755 at 828.062 kb on + strand, within MIT1002_00755 at 828.158 kb on + strand, within MIT1002_00755 at 828.166 kb on - strand, within MIT1002_00755 at 828.166 kb on - strand, within MIT1002_00755 at 828.177 kb on + strand, within MIT1002_00755 at 828.199 kb on + strand, within MIT1002_00755 at 828.213 kb on + strand, within MIT1002_00755 at 828.223 kb on + strand, within MIT1002_00755 at 828.223 kb on + strand, within MIT1002_00755 at 828.248 kb on - strand, within MIT1002_00755
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 825,928 + MIT1002_00752 0.77 -0.8 825,936 - MIT1002_00752 0.77 -4.3 825,936 - MIT1002_00752 0.77 -0.6 826,014 + MIT1002_00752 0.83 +1.4 826,022 - MIT1002_00752 0.84 +0.0 826,106 - -2.1 826,223 + -2.2 826,223 + +0.8 826,230 - +0.4 826,230 - -0.9 826,245 + +0.6 826,286 - -0.8 826,325 - +0.1 826,325 - -2.5 826,325 - -1.4 826,531 + MIT1002_00753 0.28 -0.6 826,588 - MIT1002_00753 0.33 +1.7 826,634 + MIT1002_00753 0.38 +0.2 826,642 - MIT1002_00753 0.38 -1.6 826,731 - MIT1002_00753 0.47 -1.2 826,731 - MIT1002_00753 0.47 -1.4 826,787 - MIT1002_00753 0.53 -0.2 826,812 - MIT1002_00753 0.55 -1.3 826,844 - MIT1002_00753 0.58 -1.0 827,027 + MIT1002_00753 0.76 +1.1 827,027 + MIT1002_00753 0.76 -2.0 827,035 - MIT1002_00753 0.77 +0.0 827,035 - MIT1002_00753 0.77 -0.8 827,035 - MIT1002_00753 0.77 -1.1 827,035 - MIT1002_00753 0.77 -3.5 827,035 - MIT1002_00753 0.77 -0.2 827,035 - MIT1002_00753 0.77 -1.6 827,058 - MIT1002_00753 0.79 -0.8 827,141 + MIT1002_00753 0.87 -2.2 827,141 + MIT1002_00753 0.87 -1.7 827,149 - MIT1002_00753 0.88 -1.2 827,149 - MIT1002_00753 0.88 +1.0 827,250 + -0.2 827,280 + +2.2 827,285 + -0.6 827,293 - +0.6 827,362 + +0.0 827,557 - MIT1002_00754 0.30 +1.0 827,653 - MIT1002_00754 0.87 -5.3 827,688 - -2.2 827,732 - -4.1 827,758 + -3.7 827,802 - -0.8 827,880 - -1.0 827,880 - -5.8 827,888 + -2.0 827,930 + -3.3 827,971 - -1.3 828,021 - MIT1002_00755 0.12 -4.5 828,048 + MIT1002_00755 0.12 -1.6 828,056 - MIT1002_00755 0.13 -3.0 828,062 + MIT1002_00755 0.13 -2.6 828,158 + MIT1002_00755 0.16 -2.6 828,166 - MIT1002_00755 0.17 -3.0 828,166 - MIT1002_00755 0.17 -2.2 828,177 + MIT1002_00755 0.17 -4.3 828,199 + MIT1002_00755 0.18 -2.2 828,213 + MIT1002_00755 0.18 -3.5 828,223 + MIT1002_00755 0.19 -0.5 828,223 + MIT1002_00755 0.19 -3.8 828,248 - MIT1002_00755 0.20 -0.8
Or see this region's nucleotide sequence