Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00689 and MIT1002_00690 are separated by 317 nucleotides MIT1002_00690 and MIT1002_00691 are separated by 5 nucleotides MIT1002_00691 and MIT1002_00692 are separated by 31 nucleotides MIT1002_00692 and MIT1002_00693 are separated by 2 nucleotides
MIT1002_00689: MIT1002_00689 - Ribosomal RNA large subunit methyltransferase G, at 753,305 to 754,537
_00689
MIT1002_00690: MIT1002_00690 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 754,855 to 755,496
_00690
MIT1002_00691: MIT1002_00691 - transcriptional regulator BolA, at 755,502 to 755,822
_00691
MIT1002_00692: MIT1002_00692 - PAP2 superfamily protein, at 755,854 to 756,546
_00692
MIT1002_00693: MIT1002_00693 - hypothetical protein, at 756,549 to 757,193
_00693
Position (kb) 755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 754.638 kb on + strand at 754.638 kb on + strand at 754.646 kb on - strand at 754.674 kb on + strand at 754.679 kb on + strand at 754.895 kb on - strand at 754.950 kb on + strand, within MIT1002_00690 at 754.950 kb on + strand, within MIT1002_00690 at 754.991 kb on - strand, within MIT1002_00690 at 755.001 kb on - strand, within MIT1002_00690 at 755.053 kb on + strand, within MIT1002_00690 at 755.084 kb on + strand, within MIT1002_00690 at 755.091 kb on - strand, within MIT1002_00690 at 755.149 kb on - strand, within MIT1002_00690 at 755.156 kb on + strand, within MIT1002_00690 at 755.186 kb on - strand, within MIT1002_00690 at 755.190 kb on + strand, within MIT1002_00690 at 755.224 kb on + strand, within MIT1002_00690 at 755.224 kb on + strand, within MIT1002_00690 at 755.232 kb on - strand, within MIT1002_00690 at 755.279 kb on + strand, within MIT1002_00690 at 755.295 kb on + strand, within MIT1002_00690 at 755.382 kb on + strand, within MIT1002_00690 at 755.385 kb on - strand, within MIT1002_00690 at 755.428 kb on - strand, within MIT1002_00690 at 755.440 kb on - strand at 755.453 kb on + strand at 755.486 kb on + strand at 755.571 kb on - strand, within MIT1002_00691 at 755.571 kb on - strand, within MIT1002_00691 at 755.640 kb on + strand, within MIT1002_00691 at 755.715 kb on + strand, within MIT1002_00691 at 755.723 kb on - strand, within MIT1002_00691 at 755.730 kb on + strand, within MIT1002_00691 at 755.735 kb on + strand, within MIT1002_00691 at 755.760 kb on + strand, within MIT1002_00691 at 755.768 kb on - strand, within MIT1002_00691 at 755.794 kb on + strand at 755.802 kb on + strand at 755.802 kb on - strand at 755.899 kb on - strand at 755.921 kb on + strand at 755.923 kb on + strand at 755.931 kb on - strand, within MIT1002_00692 at 755.931 kb on - strand, within MIT1002_00692 at 755.931 kb on - strand, within MIT1002_00692 at 755.945 kb on - strand, within MIT1002_00692 at 755.971 kb on + strand, within MIT1002_00692 at 755.979 kb on - strand, within MIT1002_00692 at 756.000 kb on - strand, within MIT1002_00692 at 756.004 kb on + strand, within MIT1002_00692 at 756.076 kb on + strand, within MIT1002_00692 at 756.094 kb on - strand, within MIT1002_00692 at 756.135 kb on - strand, within MIT1002_00692 at 756.136 kb on - strand, within MIT1002_00692 at 756.254 kb on + strand, within MIT1002_00692 at 756.262 kb on - strand, within MIT1002_00692 at 756.274 kb on + strand, within MIT1002_00692 at 756.281 kb on + strand, within MIT1002_00692 at 756.284 kb on + strand, within MIT1002_00692 at 756.289 kb on - strand, within MIT1002_00692 at 756.367 kb on + strand, within MIT1002_00692 at 756.409 kb on + strand, within MIT1002_00692 at 756.409 kb on + strand, within MIT1002_00692 at 756.541 kb on + strand at 756.549 kb on - strand at 756.549 kb on - strand at 756.697 kb on + strand, within MIT1002_00693 at 756.775 kb on - strand, within MIT1002_00693
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 754,638 + -1.4 754,638 + +0.2 754,646 - -1.2 754,674 + -1.2 754,679 + -0.5 754,895 - -1.9 754,950 + MIT1002_00690 0.15 -0.1 754,950 + MIT1002_00690 0.15 +1.6 754,991 - MIT1002_00690 0.21 +0.5 755,001 - MIT1002_00690 0.23 -0.3 755,053 + MIT1002_00690 0.31 +0.8 755,084 + MIT1002_00690 0.36 +1.0 755,091 - MIT1002_00690 0.37 -0.9 755,149 - MIT1002_00690 0.46 -0.8 755,156 + MIT1002_00690 0.47 -0.7 755,186 - MIT1002_00690 0.52 -0.3 755,190 + MIT1002_00690 0.52 -0.4 755,224 + MIT1002_00690 0.57 +0.5 755,224 + MIT1002_00690 0.57 -0.4 755,232 - MIT1002_00690 0.59 -0.2 755,279 + MIT1002_00690 0.66 -1.4 755,295 + MIT1002_00690 0.69 +1.0 755,382 + MIT1002_00690 0.82 +0.2 755,385 - MIT1002_00690 0.83 -0.3 755,428 - MIT1002_00690 0.89 +0.0 755,440 - -0.2 755,453 + -1.3 755,486 + +0.5 755,571 - MIT1002_00691 0.21 -0.4 755,571 - MIT1002_00691 0.21 -0.2 755,640 + MIT1002_00691 0.43 -0.6 755,715 + MIT1002_00691 0.66 +0.2 755,723 - MIT1002_00691 0.69 +0.3 755,730 + MIT1002_00691 0.71 +1.1 755,735 + MIT1002_00691 0.73 -0.5 755,760 + MIT1002_00691 0.80 +0.4 755,768 - MIT1002_00691 0.83 +0.3 755,794 + -0.3 755,802 + +1.1 755,802 - +0.7 755,899 - -0.2 755,921 + +0.4 755,923 + +0.7 755,931 - MIT1002_00692 0.11 +1.5 755,931 - MIT1002_00692 0.11 +0.7 755,931 - MIT1002_00692 0.11 -0.1 755,945 - MIT1002_00692 0.13 -2.8 755,971 + MIT1002_00692 0.17 +1.1 755,979 - MIT1002_00692 0.18 +0.2 756,000 - MIT1002_00692 0.21 -0.3 756,004 + MIT1002_00692 0.22 -0.3 756,076 + MIT1002_00692 0.32 -2.1 756,094 - MIT1002_00692 0.35 +0.0 756,135 - MIT1002_00692 0.41 -1.0 756,136 - MIT1002_00692 0.41 -0.9 756,254 + MIT1002_00692 0.58 +0.6 756,262 - MIT1002_00692 0.59 +0.8 756,274 + MIT1002_00692 0.61 +0.1 756,281 + MIT1002_00692 0.62 +0.4 756,284 + MIT1002_00692 0.62 +1.6 756,289 - MIT1002_00692 0.63 -0.3 756,367 + MIT1002_00692 0.74 -0.2 756,409 + MIT1002_00692 0.80 -0.3 756,409 + MIT1002_00692 0.80 -0.2 756,541 + -0.6 756,549 - -1.8 756,549 - +0.1 756,697 + MIT1002_00693 0.23 +0.3 756,775 - MIT1002_00693 0.35 +0.9
Or see this region's nucleotide sequence