Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00686

Experiment: monoculture; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00685 and MIT1002_00686 are separated by 169 nucleotidesMIT1002_00686 and MIT1002_00687 are separated by 99 nucleotidesMIT1002_00687 and MIT1002_00688 are separated by 37 nucleotides MIT1002_00685: MIT1002_00685 - putative TonB-dependent receptor precursor, at 748,802 to 751,204 _00685 MIT1002_00686: MIT1002_00686 - hypothetical protein, at 751,374 to 751,991 _00686 MIT1002_00687: MIT1002_00687 - ribosomal-protein-S5-alanine N-acetyltransferase, at 752,091 to 752,609 _00687 MIT1002_00688: MIT1002_00688 - Peptidyl-prolyl cis-trans isomerase A precursor, at 752,647 to 753,255 _00688 Position (kb) 751 752Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 750.418 kb on - strand, within MIT1002_00685at 750.418 kb on - strand, within MIT1002_00685at 750.443 kb on + strand, within MIT1002_00685at 750.450 kb on + strand, within MIT1002_00685at 750.479 kb on + strand, within MIT1002_00685at 750.492 kb on - strand, within MIT1002_00685at 750.494 kb on + strand, within MIT1002_00685at 750.722 kb on - strand, within MIT1002_00685at 750.749 kb on + strand, within MIT1002_00685at 750.793 kb on + strand, within MIT1002_00685at 750.793 kb on + strand, within MIT1002_00685at 750.801 kb on - strand, within MIT1002_00685at 750.837 kb on + strand, within MIT1002_00685at 750.837 kb on + strand, within MIT1002_00685at 750.868 kb on - strand, within MIT1002_00685at 750.888 kb on + strand, within MIT1002_00685at 750.894 kb on - strand, within MIT1002_00685at 750.926 kb on + strand, within MIT1002_00685at 750.934 kb on - strand, within MIT1002_00685at 751.003 kb on + strandat 751.003 kb on + strandat 751.030 kb on - strandat 751.080 kb on + strandat 751.215 kb on + strandat 751.220 kb on + strandat 751.225 kb on + strandat 751.228 kb on - strandat 751.233 kb on - strandat 751.237 kb on + strandat 751.237 kb on + strandat 751.237 kb on + strandat 751.245 kb on - strandat 751.245 kb on - strandat 751.245 kb on - strandat 751.330 kb on + strandat 751.347 kb on - strandat 751.354 kb on + strandat 751.422 kb on + strandat 751.422 kb on + strandat 751.422 kb on + strandat 751.487 kb on + strand, within MIT1002_00686at 751.511 kb on - strand, within MIT1002_00686at 751.511 kb on - strand, within MIT1002_00686at 751.601 kb on + strand, within MIT1002_00686at 751.601 kb on + strand, within MIT1002_00686at 751.616 kb on + strand, within MIT1002_00686at 751.624 kb on - strand, within MIT1002_00686at 751.624 kb on - strand, within MIT1002_00686at 751.762 kb on + strand, within MIT1002_00686at 751.762 kb on + strand, within MIT1002_00686at 751.762 kb on + strand, within MIT1002_00686at 751.773 kb on - strand, within MIT1002_00686at 751.781 kb on + strand, within MIT1002_00686at 751.802 kb on - strand, within MIT1002_00686at 751.825 kb on - strand, within MIT1002_00686at 751.838 kb on + strand, within MIT1002_00686at 751.840 kb on + strand, within MIT1002_00686at 751.940 kb on + strandat 751.945 kb on + strandat 751.945 kb on + strandat 751.953 kb on - strandat 752.045 kb on - strandat 752.083 kb on + strandat 752.091 kb on - strandat 752.131 kb on + strandat 752.162 kb on - strand, within MIT1002_00687at 752.239 kb on + strand, within MIT1002_00687at 752.260 kb on + strand, within MIT1002_00687at 752.277 kb on + strand, within MIT1002_00687at 752.277 kb on + strand, within MIT1002_00687at 752.277 kb on + strand, within MIT1002_00687at 752.284 kb on + strand, within MIT1002_00687at 752.285 kb on - strand, within MIT1002_00687at 752.285 kb on - strand, within MIT1002_00687at 752.324 kb on + strand, within MIT1002_00687at 752.340 kb on + strand, within MIT1002_00687at 752.381 kb on - strand, within MIT1002_00687at 752.393 kb on + strand, within MIT1002_00687at 752.412 kb on + strand, within MIT1002_00687at 752.419 kb on - strand, within MIT1002_00687at 752.420 kb on - strand, within MIT1002_00687at 752.430 kb on + strand, within MIT1002_00687at 752.437 kb on + strand, within MIT1002_00687at 752.439 kb on + strand, within MIT1002_00687at 752.439 kb on + strand, within MIT1002_00687at 752.439 kb on + strand, within MIT1002_00687at 752.447 kb on - strand, within MIT1002_00687at 752.447 kb on - strand, within MIT1002_00687at 752.463 kb on - strand, within MIT1002_00687at 752.489 kb on - strand, within MIT1002_00687at 752.500 kb on + strand, within MIT1002_00687at 752.510 kb on + strand, within MIT1002_00687at 752.515 kb on + strand, within MIT1002_00687at 752.527 kb on + strand, within MIT1002_00687at 752.535 kb on - strand, within MIT1002_00687at 752.544 kb on - strand, within MIT1002_00687at 752.585 kb on + strandat 752.619 kb on + strandat 752.619 kb on - strandat 752.709 kb on + strand, within MIT1002_00688at 752.797 kb on + strand, within MIT1002_00688at 752.807 kb on + strand, within MIT1002_00688at 752.815 kb on - strand, within MIT1002_00688at 752.879 kb on + strand, within MIT1002_00688at 752.889 kb on + strand, within MIT1002_00688at 752.897 kb on - strand, within MIT1002_00688at 752.968 kb on - strand, within MIT1002_00688

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4
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750,418 - MIT1002_00685 0.67 -0.1
750,418 - MIT1002_00685 0.67 +1.7
750,443 + MIT1002_00685 0.68 -2.1
750,450 + MIT1002_00685 0.69 -0.2
750,479 + MIT1002_00685 0.70 -0.5
750,492 - MIT1002_00685 0.70 +0.2
750,494 + MIT1002_00685 0.70 -1.1
750,722 - MIT1002_00685 0.80 -0.1
750,749 + MIT1002_00685 0.81 +1.4
750,793 + MIT1002_00685 0.83 +0.6
750,793 + MIT1002_00685 0.83 +0.1
750,801 - MIT1002_00685 0.83 +2.6
750,837 + MIT1002_00685 0.85 +0.1
750,837 + MIT1002_00685 0.85 +0.2
750,868 - MIT1002_00685 0.86 -1.1
750,888 + MIT1002_00685 0.87 +0.0
750,894 - MIT1002_00685 0.87 -0.9
750,926 + MIT1002_00685 0.88 -0.0
750,934 - MIT1002_00685 0.89 +1.7
751,003 + +0.5
751,003 + -2.0
751,030 - -1.3
751,080 + +0.8
751,215 + -0.6
751,220 + +0.8
751,225 + +0.1
751,228 - +1.1
751,233 - +0.5
751,237 + +0.5
751,237 + -0.9
751,237 + -0.2
751,245 - -1.1
751,245 - +0.6
751,245 - +0.5
751,330 + +0.2
751,347 - -0.8
751,354 + +0.3
751,422 + +0.9
751,422 + +1.3
751,422 + -0.9
751,487 + MIT1002_00686 0.18 -2.6
751,511 - MIT1002_00686 0.22 +0.3
751,511 - MIT1002_00686 0.22 -0.3
751,601 + MIT1002_00686 0.37 +0.2
751,601 + MIT1002_00686 0.37 -0.4
751,616 + MIT1002_00686 0.39 +4.0
751,624 - MIT1002_00686 0.40 -1.5
751,624 - MIT1002_00686 0.40 +1.3
751,762 + MIT1002_00686 0.63 +0.5
751,762 + MIT1002_00686 0.63 +0.6
751,762 + MIT1002_00686 0.63 +0.0
751,773 - MIT1002_00686 0.65 -1.7
751,781 + MIT1002_00686 0.66 +0.3
751,802 - MIT1002_00686 0.69 -0.1
751,825 - MIT1002_00686 0.73 -0.1
751,838 + MIT1002_00686 0.75 -0.2
751,840 + MIT1002_00686 0.75 +1.3
751,940 + -0.3
751,945 + -2.8
751,945 + -0.2
751,953 - +0.6
752,045 - -0.1
752,083 + -0.6
752,091 - -0.6
752,131 + -0.8
752,162 - MIT1002_00687 0.14 -0.3
752,239 + MIT1002_00687 0.29 +0.2
752,260 + MIT1002_00687 0.33 -0.0
752,277 + MIT1002_00687 0.36 -1.1
752,277 + MIT1002_00687 0.36 +0.5
752,277 + MIT1002_00687 0.36 -0.7
752,284 + MIT1002_00687 0.37 +0.6
752,285 - MIT1002_00687 0.37 +0.1
752,285 - MIT1002_00687 0.37 -0.7
752,324 + MIT1002_00687 0.45 -0.2
752,340 + MIT1002_00687 0.48 -0.7
752,381 - MIT1002_00687 0.56 -3.9
752,393 + MIT1002_00687 0.58 +1.5
752,412 + MIT1002_00687 0.62 -0.3
752,419 - MIT1002_00687 0.63 -2.6
752,420 - MIT1002_00687 0.63 +0.7
752,430 + MIT1002_00687 0.65 +0.5
752,437 + MIT1002_00687 0.67 -0.7
752,439 + MIT1002_00687 0.67 +0.6
752,439 + MIT1002_00687 0.67 -0.5
752,439 + MIT1002_00687 0.67 -0.9
752,447 - MIT1002_00687 0.69 -3.3
752,447 - MIT1002_00687 0.69 +0.7
752,463 - MIT1002_00687 0.72 +1.0
752,489 - MIT1002_00687 0.77 -0.8
752,500 + MIT1002_00687 0.79 -0.9
752,510 + MIT1002_00687 0.81 +0.0
752,515 + MIT1002_00687 0.82 -0.6
752,527 + MIT1002_00687 0.84 +1.4
752,535 - MIT1002_00687 0.86 -0.4
752,544 - MIT1002_00687 0.87 -1.4
752,585 + -0.2
752,619 + +1.4
752,619 - -0.1
752,709 + MIT1002_00688 0.10 -0.7
752,797 + MIT1002_00688 0.25 -0.3
752,807 + MIT1002_00688 0.26 +0.3
752,815 - MIT1002_00688 0.28 -0.1
752,879 + MIT1002_00688 0.38 +0.9
752,889 + MIT1002_00688 0.40 -1.0
752,897 - MIT1002_00688 0.41 +0.7
752,968 - MIT1002_00688 0.53 -0.1

Or see this region's nucleotide sequence