Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00665 and MIT1002_00666 are separated by 129 nucleotides MIT1002_00666 and MIT1002_00667 are separated by 305 nucleotides
MIT1002_00665: MIT1002_00665 - Siroheme synthase, at 726,333 to 727,715
_00665
MIT1002_00666: MIT1002_00666 - Cold-shock DEAD box protein A, at 727,845 to 729,635
_00666
MIT1002_00667: MIT1002_00667 - tetratricopeptide repeat protein, at 729,941 to 732,715
_00667
Position (kb) 727
728
729
730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 727.898 kb on - strand at 727.924 kb on + strand at 727.946 kb on - strand at 728.008 kb on - strand at 728.008 kb on - strand at 728.009 kb on + strand at 728.017 kb on - strand at 728.051 kb on + strand, within MIT1002_00666 at 728.094 kb on - strand, within MIT1002_00666 at 728.147 kb on + strand, within MIT1002_00666 at 728.155 kb on - strand, within MIT1002_00666 at 728.211 kb on - strand, within MIT1002_00666 at 728.280 kb on + strand, within MIT1002_00666 at 728.287 kb on + strand, within MIT1002_00666 at 728.295 kb on - strand, within MIT1002_00666 at 728.333 kb on + strand, within MIT1002_00666 at 728.358 kb on - strand, within MIT1002_00666 at 728.358 kb on - strand, within MIT1002_00666 at 728.358 kb on - strand, within MIT1002_00666 at 728.367 kb on + strand, within MIT1002_00666 at 728.478 kb on + strand, within MIT1002_00666 at 728.604 kb on + strand, within MIT1002_00666 at 728.666 kb on + strand, within MIT1002_00666 at 728.702 kb on + strand, within MIT1002_00666 at 729.004 kb on + strand, within MIT1002_00666 at 729.014 kb on + strand, within MIT1002_00666 at 729.068 kb on - strand, within MIT1002_00666 at 729.095 kb on + strand, within MIT1002_00666 at 729.095 kb on + strand, within MIT1002_00666 at 729.095 kb on + strand, within MIT1002_00666 at 729.095 kb on + strand, within MIT1002_00666 at 729.103 kb on - strand, within MIT1002_00666 at 729.103 kb on - strand, within MIT1002_00666 at 729.103 kb on - strand, within MIT1002_00666 at 729.121 kb on - strand, within MIT1002_00666 at 729.235 kb on + strand, within MIT1002_00666 at 729.240 kb on + strand, within MIT1002_00666 at 729.248 kb on - strand, within MIT1002_00666 at 729.259 kb on - strand, within MIT1002_00666 at 729.308 kb on - strand, within MIT1002_00666 at 729.424 kb on + strand, within MIT1002_00666 at 729.478 kb on + strand at 729.480 kb on - strand at 729.482 kb on + strand at 729.498 kb on + strand at 729.528 kb on - strand at 729.548 kb on + strand at 729.600 kb on - strand at 729.605 kb on + strand at 729.631 kb on - strand at 729.633 kb on - strand at 729.633 kb on - strand at 729.639 kb on + strand at 729.655 kb on + strand at 729.711 kb on + strand at 729.711 kb on + strand at 729.711 kb on + strand at 729.719 kb on - strand at 729.719 kb on - strand at 729.719 kb on - strand at 729.726 kb on + strand at 729.858 kb on - strand at 729.955 kb on + strand at 729.992 kb on + strand at 729.992 kb on + strand at 730.060 kb on + strand at 730.079 kb on - strand at 730.160 kb on + strand at 730.215 kb on + strand at 730.327 kb on - strand, within MIT1002_00667 at 730.327 kb on - strand, within MIT1002_00667 at 730.327 kb on - strand, within MIT1002_00667 at 730.408 kb on - strand, within MIT1002_00667 at 730.449 kb on + strand, within MIT1002_00667 at 730.463 kb on - strand, within MIT1002_00667 at 730.486 kb on - strand, within MIT1002_00667 at 730.486 kb on - strand, within MIT1002_00667 at 730.562 kb on - strand, within MIT1002_00667 at 730.628 kb on - strand, within MIT1002_00667
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 727,898 - -1.4 727,924 + -0.5 727,946 - -1.8 728,008 - -0.7 728,008 - -2.1 728,009 + +2.9 728,017 - -0.7 728,051 + MIT1002_00666 0.12 -1.4 728,094 - MIT1002_00666 0.14 -2.5 728,147 + MIT1002_00666 0.17 -1.1 728,155 - MIT1002_00666 0.17 -0.5 728,211 - MIT1002_00666 0.20 -1.5 728,280 + MIT1002_00666 0.24 +0.3 728,287 + MIT1002_00666 0.25 -0.2 728,295 - MIT1002_00666 0.25 -1.5 728,333 + MIT1002_00666 0.27 +1.3 728,358 - MIT1002_00666 0.29 -0.6 728,358 - MIT1002_00666 0.29 -2.1 728,358 - MIT1002_00666 0.29 -0.5 728,367 + MIT1002_00666 0.29 -1.0 728,478 + MIT1002_00666 0.35 -1.0 728,604 + MIT1002_00666 0.42 -0.4 728,666 + MIT1002_00666 0.46 -1.1 728,702 + MIT1002_00666 0.48 -0.8 729,004 + MIT1002_00666 0.65 -1.0 729,014 + MIT1002_00666 0.65 -3.3 729,068 - MIT1002_00666 0.68 -0.6 729,095 + MIT1002_00666 0.70 -1.3 729,095 + MIT1002_00666 0.70 -2.3 729,095 + MIT1002_00666 0.70 -0.2 729,095 + MIT1002_00666 0.70 -2.5 729,103 - MIT1002_00666 0.70 -1.0 729,103 - MIT1002_00666 0.70 -1.9 729,103 - MIT1002_00666 0.70 -2.7 729,121 - MIT1002_00666 0.71 -2.4 729,235 + MIT1002_00666 0.78 -1.8 729,240 + MIT1002_00666 0.78 -0.3 729,248 - MIT1002_00666 0.78 -2.3 729,259 - MIT1002_00666 0.79 +0.7 729,308 - MIT1002_00666 0.82 -0.4 729,424 + MIT1002_00666 0.88 -2.5 729,478 + -0.4 729,480 - -3.0 729,482 + -3.2 729,498 + -1.2 729,528 - +0.0 729,548 + -1.7 729,600 - -0.3 729,605 + -3.2 729,631 - -0.6 729,633 - -0.4 729,633 - -2.0 729,639 + -1.6 729,655 + -2.7 729,711 + -1.6 729,711 + -0.7 729,711 + +0.0 729,719 - -2.3 729,719 - -0.1 729,719 - -1.7 729,726 + -2.4 729,858 - -0.8 729,955 + +3.1 729,992 + -3.1 729,992 + -1.6 730,060 + +0.7 730,079 - -0.0 730,160 + -0.5 730,215 + -0.7 730,327 - MIT1002_00667 0.14 +1.1 730,327 - MIT1002_00667 0.14 -0.4 730,327 - MIT1002_00667 0.14 -1.5 730,408 - MIT1002_00667 0.17 +0.4 730,449 + MIT1002_00667 0.18 -0.8 730,463 - MIT1002_00667 0.19 -0.1 730,486 - MIT1002_00667 0.20 +0.7 730,486 - MIT1002_00667 0.20 +0.6 730,562 - MIT1002_00667 0.22 +0.2 730,628 - MIT1002_00667 0.25 +2.4
Or see this region's nucleotide sequence