Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00643

Experiment: monoculture; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00642 and MIT1002_00643 are separated by 133 nucleotidesMIT1002_00643 and MIT1002_00644 are separated by 172 nucleotides MIT1002_00642: MIT1002_00642 - Sensor protein BasS, at 696,459 to 697,808 _00642 MIT1002_00643: MIT1002_00643 - SH3 domain-containing protein, at 697,942 to 698,544 _00643 MIT1002_00644: MIT1002_00644 - hypothetical protein, at 698,717 to 700,222 _00644 Position (kb) 697 698 699Strain fitness (log2 ratio) -2 -1 0 1 2at 696.993 kb on + strand, within MIT1002_00642at 697.000 kb on + strand, within MIT1002_00642at 697.001 kb on - strand, within MIT1002_00642at 697.008 kb on - strand, within MIT1002_00642at 697.117 kb on + strand, within MIT1002_00642at 697.203 kb on - strand, within MIT1002_00642at 697.220 kb on - strand, within MIT1002_00642at 697.329 kb on + strand, within MIT1002_00642at 697.337 kb on - strand, within MIT1002_00642at 697.346 kb on + strand, within MIT1002_00642at 697.515 kb on + strand, within MIT1002_00642at 697.517 kb on + strand, within MIT1002_00642at 697.523 kb on - strand, within MIT1002_00642at 697.554 kb on - strand, within MIT1002_00642at 697.559 kb on - strand, within MIT1002_00642at 697.562 kb on + strand, within MIT1002_00642at 697.674 kb on - strandat 697.674 kb on - strandat 697.674 kb on - strandat 697.685 kb on + strandat 697.693 kb on - strandat 697.697 kb on + strandat 697.697 kb on + strandat 697.705 kb on - strandat 697.705 kb on - strandat 697.721 kb on + strandat 697.780 kb on + strandat 697.781 kb on + strandat 697.788 kb on - strandat 697.789 kb on - strandat 697.806 kb on - strandat 697.824 kb on + strandat 697.831 kb on + strandat 697.833 kb on - strandat 697.848 kb on + strandat 697.848 kb on + strandat 697.856 kb on - strandat 697.856 kb on - strandat 697.856 kb on - strandat 697.856 kb on - strandat 697.939 kb on + strandat 697.944 kb on + strandat 697.987 kb on - strandat 698.034 kb on + strand, within MIT1002_00643at 698.112 kb on - strand, within MIT1002_00643at 698.231 kb on + strand, within MIT1002_00643at 698.264 kb on + strand, within MIT1002_00643at 698.264 kb on + strand, within MIT1002_00643at 698.264 kb on + strand, within MIT1002_00643at 698.269 kb on - strand, within MIT1002_00643at 698.281 kb on + strand, within MIT1002_00643at 698.357 kb on + strand, within MIT1002_00643at 698.381 kb on - strand, within MIT1002_00643at 698.398 kb on + strand, within MIT1002_00643at 698.408 kb on + strand, within MIT1002_00643at 698.416 kb on - strand, within MIT1002_00643at 698.416 kb on - strand, within MIT1002_00643at 698.420 kb on - strand, within MIT1002_00643at 698.601 kb on + strandat 698.678 kb on + strandat 698.686 kb on - strandat 698.686 kb on - strandat 698.686 kb on - strandat 698.694 kb on + strandat 698.699 kb on + strandat 698.805 kb on + strandat 698.807 kb on + strandat 698.812 kb on + strandat 698.812 kb on + strandat 698.812 kb on + strandat 698.812 kb on + strandat 698.820 kb on - strandat 698.820 kb on - strandat 698.820 kb on - strandat 698.850 kb on + strandat 698.864 kb on - strandat 698.938 kb on + strand, within MIT1002_00644at 698.955 kb on + strand, within MIT1002_00644at 698.955 kb on + strand, within MIT1002_00644at 698.955 kb on + strand, within MIT1002_00644at 698.968 kb on - strand, within MIT1002_00644at 699.015 kb on - strand, within MIT1002_00644at 699.030 kb on - strand, within MIT1002_00644at 699.088 kb on + strand, within MIT1002_00644at 699.121 kb on + strand, within MIT1002_00644at 699.152 kb on + strand, within MIT1002_00644at 699.187 kb on - strand, within MIT1002_00644at 699.204 kb on + strand, within MIT1002_00644at 699.249 kb on + strand, within MIT1002_00644at 699.279 kb on + strand, within MIT1002_00644at 699.285 kb on + strand, within MIT1002_00644at 699.294 kb on - strand, within MIT1002_00644at 699.294 kb on - strand, within MIT1002_00644at 699.294 kb on - strand, within MIT1002_00644at 699.382 kb on - strand, within MIT1002_00644at 699.409 kb on - strand, within MIT1002_00644at 699.416 kb on + strand, within MIT1002_00644at 699.433 kb on - strand, within MIT1002_00644at 699.458 kb on - strand, within MIT1002_00644at 699.495 kb on - strand, within MIT1002_00644at 699.495 kb on - strand, within MIT1002_00644at 699.525 kb on + strand, within MIT1002_00644

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4
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696,993 + MIT1002_00642 0.40 +1.3
697,000 + MIT1002_00642 0.40 +1.0
697,001 - MIT1002_00642 0.40 -0.6
697,008 - MIT1002_00642 0.41 -0.6
697,117 + MIT1002_00642 0.49 -1.1
697,203 - MIT1002_00642 0.55 -1.2
697,220 - MIT1002_00642 0.56 +0.2
697,329 + MIT1002_00642 0.64 -2.2
697,337 - MIT1002_00642 0.65 +0.3
697,346 + MIT1002_00642 0.66 -0.1
697,515 + MIT1002_00642 0.78 -1.0
697,517 + MIT1002_00642 0.78 -0.3
697,523 - MIT1002_00642 0.79 +0.4
697,554 - MIT1002_00642 0.81 +0.0
697,559 - MIT1002_00642 0.81 +0.4
697,562 + MIT1002_00642 0.82 +0.5
697,674 - +0.6
697,674 - -1.9
697,674 - -0.5
697,685 + -0.0
697,693 - -0.5
697,697 + -1.1
697,697 + -0.0
697,705 - +0.2
697,705 - -0.5
697,721 + +0.9
697,780 + -0.0
697,781 + +0.2
697,788 - +0.8
697,789 - +0.8
697,806 - +2.7
697,824 + +0.6
697,831 + -1.1
697,833 - +0.4
697,848 + -0.5
697,848 + -0.2
697,856 - -2.7
697,856 - +1.6
697,856 - -0.4
697,856 - -0.4
697,939 + +1.2
697,944 + -2.6
697,987 - -0.1
698,034 + MIT1002_00643 0.15 -0.7
698,112 - MIT1002_00643 0.28 -2.5
698,231 + MIT1002_00643 0.48 -2.7
698,264 + MIT1002_00643 0.53 +0.6
698,264 + MIT1002_00643 0.53 +1.5
698,264 + MIT1002_00643 0.53 +0.1
698,269 - MIT1002_00643 0.54 -1.0
698,281 + MIT1002_00643 0.56 -0.5
698,357 + MIT1002_00643 0.69 -0.4
698,381 - MIT1002_00643 0.73 -1.8
698,398 + MIT1002_00643 0.76 +0.6
698,408 + MIT1002_00643 0.77 -1.9
698,416 - MIT1002_00643 0.79 -1.0
698,416 - MIT1002_00643 0.79 +0.9
698,420 - MIT1002_00643 0.79 -0.1
698,601 + +0.6
698,678 + -1.3
698,686 - -0.2
698,686 - -0.2
698,686 - -1.6
698,694 + -1.6
698,699 + +0.0
698,805 + -0.1
698,807 + -0.6
698,812 + +1.1
698,812 + -1.3
698,812 + -0.2
698,812 + +0.9
698,820 - -0.3
698,820 - -1.5
698,820 - -0.8
698,850 + +0.1
698,864 - +0.0
698,938 + MIT1002_00644 0.15 +0.4
698,955 + MIT1002_00644 0.16 -1.7
698,955 + MIT1002_00644 0.16 -0.6
698,955 + MIT1002_00644 0.16 -0.0
698,968 - MIT1002_00644 0.17 -0.6
699,015 - MIT1002_00644 0.20 +0.4
699,030 - MIT1002_00644 0.21 -0.6
699,088 + MIT1002_00644 0.25 -0.8
699,121 + MIT1002_00644 0.27 +0.2
699,152 + MIT1002_00644 0.29 -1.0
699,187 - MIT1002_00644 0.31 -0.6
699,204 + MIT1002_00644 0.32 +0.9
699,249 + MIT1002_00644 0.35 -1.4
699,279 + MIT1002_00644 0.37 -1.1
699,285 + MIT1002_00644 0.38 -0.7
699,294 - MIT1002_00644 0.38 +0.6
699,294 - MIT1002_00644 0.38 +0.6
699,294 - MIT1002_00644 0.38 +0.2
699,382 - MIT1002_00644 0.44 +0.2
699,409 - MIT1002_00644 0.46 -1.0
699,416 + MIT1002_00644 0.46 -2.3
699,433 - MIT1002_00644 0.48 -0.6
699,458 - MIT1002_00644 0.49 -0.3
699,495 - MIT1002_00644 0.52 -1.5
699,495 - MIT1002_00644 0.52 -0.5
699,525 + MIT1002_00644 0.54 +1.4

Or see this region's nucleotide sequence