Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00600 and MIT1002_00601 are separated by 658 nucleotides MIT1002_00601 and MIT1002_00602 are separated by 413 nucleotides MIT1002_00602 and MIT1002_00603 are separated by 27 nucleotides
MIT1002_00600: MIT1002_00600 - hypothetical protein, at 652,119 to 652,571
_00600
MIT1002_00601: MIT1002_00601 - hypothetical protein, at 653,230 to 654,849
_00601
MIT1002_00602: MIT1002_00602 - hypothetical protein, at 655,263 to 655,595
_00602
MIT1002_00603: MIT1002_00603 - hypothetical protein, at 655,623 to 656,162
_00603
Position (kb) 653
654
655 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 652.356 kb on - strand, within MIT1002_00600 at 652.358 kb on + strand, within MIT1002_00600 at 652.358 kb on + strand, within MIT1002_00600 at 652.366 kb on - strand, within MIT1002_00600 at 652.366 kb on - strand, within MIT1002_00600 at 652.366 kb on - strand, within MIT1002_00600 at 652.401 kb on - strand, within MIT1002_00600 at 652.417 kb on + strand, within MIT1002_00600 at 652.461 kb on + strand, within MIT1002_00600 at 652.469 kb on - strand, within MIT1002_00600 at 652.498 kb on + strand, within MIT1002_00600 at 652.498 kb on + strand, within MIT1002_00600 at 652.498 kb on + strand, within MIT1002_00600 at 652.506 kb on - strand, within MIT1002_00600 at 652.525 kb on - strand, within MIT1002_00600 at 652.534 kb on + strand at 652.542 kb on - strand at 652.542 kb on - strand at 652.542 kb on - strand at 652.543 kb on - strand at 652.546 kb on + strand at 652.593 kb on - strand at 652.658 kb on + strand at 652.659 kb on + strand at 652.666 kb on - strand at 652.666 kb on - strand at 652.680 kb on + strand at 652.714 kb on + strand at 652.714 kb on + strand at 652.720 kb on - strand at 652.720 kb on - strand at 652.737 kb on - strand at 652.737 kb on - strand at 652.767 kb on + strand at 652.768 kb on + strand at 652.769 kb on - strand at 652.776 kb on - strand at 652.790 kb on + strand at 652.827 kb on + strand at 652.918 kb on + strand at 652.919 kb on - strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.946 kb on + strand at 652.946 kb on + strand at 652.954 kb on - strand at 652.969 kb on - strand at 652.982 kb on + strand at 653.032 kb on + strand at 653.227 kb on - strand at 653.252 kb on - strand at 653.288 kb on + strand at 653.314 kb on + strand at 653.319 kb on + strand at 653.397 kb on + strand, within MIT1002_00601 at 653.397 kb on + strand, within MIT1002_00601 at 653.405 kb on - strand, within MIT1002_00601 at 653.405 kb on - strand, within MIT1002_00601 at 653.405 kb on - strand, within MIT1002_00601 at 653.491 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.504 kb on - strand, within MIT1002_00601 at 653.509 kb on - strand, within MIT1002_00601 at 653.509 kb on - strand, within MIT1002_00601 at 653.509 kb on - strand, within MIT1002_00601 at 653.509 kb on - strand, within MIT1002_00601 at 653.509 kb on - strand, within MIT1002_00601 at 653.556 kb on + strand, within MIT1002_00601 at 653.564 kb on + strand, within MIT1002_00601 at 653.564 kb on - strand, within MIT1002_00601 at 653.564 kb on - strand, within MIT1002_00601 at 653.585 kb on + strand, within MIT1002_00601 at 653.760 kb on - strand, within MIT1002_00601 at 653.779 kb on + strand, within MIT1002_00601 at 653.788 kb on + strand, within MIT1002_00601 at 653.796 kb on - strand, within MIT1002_00601 at 653.868 kb on - strand, within MIT1002_00601 at 653.874 kb on + strand, within MIT1002_00601 at 653.874 kb on + strand, within MIT1002_00601 at 653.883 kb on + strand, within MIT1002_00601 at 653.883 kb on + strand, within MIT1002_00601 at 653.927 kb on - strand, within MIT1002_00601 at 653.944 kb on - strand, within MIT1002_00601 at 653.996 kb on + strand, within MIT1002_00601 at 653.997 kb on + strand, within MIT1002_00601 at 654.004 kb on - strand, within MIT1002_00601 at 654.004 kb on - strand, within MIT1002_00601 at 654.034 kb on - strand, within MIT1002_00601 at 654.035 kb on + strand, within MIT1002_00601 at 654.091 kb on + strand, within MIT1002_00601 at 654.164 kb on - strand, within MIT1002_00601 at 654.165 kb on + strand, within MIT1002_00601 at 654.225 kb on - strand, within MIT1002_00601 at 654.242 kb on + strand, within MIT1002_00601 at 654.315 kb on - strand, within MIT1002_00601 at 654.350 kb on - strand, within MIT1002_00601 at 654.378 kb on - strand, within MIT1002_00601 at 654.385 kb on + strand, within MIT1002_00601 at 654.385 kb on + strand, within MIT1002_00601 at 654.385 kb on + strand, within MIT1002_00601 at 654.385 kb on + strand, within MIT1002_00601 at 654.393 kb on - strand, within MIT1002_00601 at 654.393 kb on - strand, within MIT1002_00601 at 654.400 kb on + strand, within MIT1002_00601 at 654.400 kb on - strand, within MIT1002_00601 at 654.403 kb on - strand, within MIT1002_00601 at 654.413 kb on + strand, within MIT1002_00601 at 654.469 kb on + strand, within MIT1002_00601 at 654.476 kb on - strand, within MIT1002_00601 at 654.478 kb on + strand, within MIT1002_00601 at 654.493 kb on - strand, within MIT1002_00601 at 654.543 kb on + strand, within MIT1002_00601 at 654.546 kb on - strand, within MIT1002_00601 at 654.548 kb on + strand, within MIT1002_00601 at 654.571 kb on + strand, within MIT1002_00601 at 654.615 kb on + strand, within MIT1002_00601 at 654.615 kb on + strand, within MIT1002_00601 at 654.615 kb on + strand, within MIT1002_00601 at 654.623 kb on - strand, within MIT1002_00601 at 654.682 kb on - strand, within MIT1002_00601 at 654.693 kb on - strand at 654.693 kb on - strand at 654.711 kb on - strand at 654.717 kb on + strand at 654.720 kb on + strand at 654.730 kb on + strand at 654.738 kb on - strand at 654.796 kb on + strand at 654.919 kb on + strand at 655.014 kb on + strand at 655.036 kb on - strand at 655.036 kb on - strand at 655.054 kb on + strand at 655.102 kb on - strand at 655.102 kb on - strand at 655.124 kb on + strand at 655.124 kb on + strand at 655.124 kb on + strand at 655.124 kb on + strand at 655.153 kb on + strand at 655.224 kb on + strand at 655.228 kb on + strand at 655.232 kb on - strand at 655.232 kb on - strand at 655.244 kb on - strand at 655.247 kb on + strand at 655.253 kb on + strand at 655.253 kb on + strand at 655.253 kb on + strand at 655.253 kb on + strand at 655.261 kb on - strand at 655.261 kb on - strand at 655.281 kb on - strand at 655.352 kb on + strand, within MIT1002_00602 at 655.574 kb on - strand at 655.629 kb on + strand at 655.675 kb on + strand at 655.675 kb on + strand at 655.675 kb on + strand at 655.683 kb on - strand, within MIT1002_00603 at 655.730 kb on + strand, within MIT1002_00603 at 655.738 kb on - strand, within MIT1002_00603 at 655.754 kb on + strand, within MIT1002_00603 at 655.754 kb on + strand, within MIT1002_00603 at 655.754 kb on + strand, within MIT1002_00603 at 655.771 kb on + strand, within MIT1002_00603 at 655.774 kb on - strand, within MIT1002_00603 at 655.827 kb on + strand, within MIT1002_00603 at 655.840 kb on + strand, within MIT1002_00603
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 652,356 - MIT1002_00600 0.52 +0.2 652,358 + MIT1002_00600 0.53 -0.3 652,358 + MIT1002_00600 0.53 -0.5 652,366 - MIT1002_00600 0.55 +1.2 652,366 - MIT1002_00600 0.55 +0.1 652,366 - MIT1002_00600 0.55 +1.3 652,401 - MIT1002_00600 0.62 -1.6 652,417 + MIT1002_00600 0.66 -0.8 652,461 + MIT1002_00600 0.75 +0.6 652,469 - MIT1002_00600 0.77 -0.3 652,498 + MIT1002_00600 0.84 -0.8 652,498 + MIT1002_00600 0.84 -0.6 652,498 + MIT1002_00600 0.84 -1.7 652,506 - MIT1002_00600 0.85 -0.6 652,525 - MIT1002_00600 0.90 -0.1 652,534 + -0.1 652,542 - +2.0 652,542 - -0.2 652,542 - +0.5 652,543 - +0.0 652,546 + +0.2 652,593 - -0.7 652,658 + -0.0 652,659 + -0.1 652,666 - -2.4 652,666 - -1.4 652,680 + -0.5 652,714 + +2.6 652,714 + +1.0 652,720 - -1.3 652,720 - -0.6 652,737 - -0.4 652,737 - -0.1 652,767 + -1.6 652,768 + +0.3 652,769 - +0.4 652,776 - +0.6 652,790 + +0.0 652,827 + +0.7 652,918 + -0.0 652,919 - +0.2 652,934 + -0.2 652,934 + -0.4 652,934 + +0.8 652,934 + -0.5 652,934 + +0.8 652,934 + +0.0 652,934 + -1.3 652,942 - +0.2 652,942 - +1.4 652,942 - +0.0 652,942 - +0.4 652,942 - -0.7 652,942 - -0.7 652,942 - +0.0 652,942 - -0.0 652,942 - -0.3 652,946 + +0.4 652,946 + -1.7 652,954 - -1.8 652,969 - -0.8 652,982 + +0.2 653,032 + +0.2 653,227 - +0.3 653,252 - +0.2 653,288 + +0.0 653,314 + -0.6 653,319 + -0.2 653,397 + MIT1002_00601 0.10 +0.1 653,397 + MIT1002_00601 0.10 -0.5 653,405 - MIT1002_00601 0.11 -0.2 653,405 - MIT1002_00601 0.11 -0.2 653,405 - MIT1002_00601 0.11 -0.2 653,491 + MIT1002_00601 0.16 -0.5 653,501 + MIT1002_00601 0.17 -1.0 653,501 + MIT1002_00601 0.17 +0.2 653,501 + MIT1002_00601 0.17 +1.1 653,501 + MIT1002_00601 0.17 -0.6 653,501 + MIT1002_00601 0.17 -0.7 653,501 + MIT1002_00601 0.17 +1.1 653,501 + MIT1002_00601 0.17 -0.3 653,504 - MIT1002_00601 0.17 +0.7 653,509 - MIT1002_00601 0.17 +0.9 653,509 - MIT1002_00601 0.17 +0.5 653,509 - MIT1002_00601 0.17 +2.4 653,509 - MIT1002_00601 0.17 +1.3 653,509 - MIT1002_00601 0.17 -1.1 653,556 + MIT1002_00601 0.20 +0.4 653,564 + MIT1002_00601 0.21 -0.3 653,564 - MIT1002_00601 0.21 +1.0 653,564 - MIT1002_00601 0.21 -0.4 653,585 + MIT1002_00601 0.22 -1.1 653,760 - MIT1002_00601 0.33 -0.8 653,779 + MIT1002_00601 0.34 -2.1 653,788 + MIT1002_00601 0.34 -0.1 653,796 - MIT1002_00601 0.35 -0.6 653,868 - MIT1002_00601 0.39 +0.5 653,874 + MIT1002_00601 0.40 -0.5 653,874 + MIT1002_00601 0.40 +0.6 653,883 + MIT1002_00601 0.40 -1.4 653,883 + MIT1002_00601 0.40 +1.0 653,927 - MIT1002_00601 0.43 -1.3 653,944 - MIT1002_00601 0.44 -0.4 653,996 + MIT1002_00601 0.47 -0.5 653,997 + MIT1002_00601 0.47 -0.9 654,004 - MIT1002_00601 0.48 +1.9 654,004 - MIT1002_00601 0.48 -0.1 654,034 - MIT1002_00601 0.50 +0.2 654,035 + MIT1002_00601 0.50 -0.2 654,091 + MIT1002_00601 0.53 -0.4 654,164 - MIT1002_00601 0.58 +0.9 654,165 + MIT1002_00601 0.58 +2.7 654,225 - MIT1002_00601 0.61 -0.4 654,242 + MIT1002_00601 0.62 +0.5 654,315 - MIT1002_00601 0.67 -1.0 654,350 - MIT1002_00601 0.69 +0.3 654,378 - MIT1002_00601 0.71 -0.6 654,385 + MIT1002_00601 0.71 -1.9 654,385 + MIT1002_00601 0.71 +0.3 654,385 + MIT1002_00601 0.71 -0.7 654,385 + MIT1002_00601 0.71 -0.4 654,393 - MIT1002_00601 0.72 +2.1 654,393 - MIT1002_00601 0.72 -0.0 654,400 + MIT1002_00601 0.72 -1.5 654,400 - MIT1002_00601 0.72 +1.8 654,403 - MIT1002_00601 0.72 -0.9 654,413 + MIT1002_00601 0.73 +2.4 654,469 + MIT1002_00601 0.76 -0.5 654,476 - MIT1002_00601 0.77 -0.8 654,478 + MIT1002_00601 0.77 +1.6 654,493 - MIT1002_00601 0.78 -0.6 654,543 + MIT1002_00601 0.81 +0.4 654,546 - MIT1002_00601 0.81 -1.0 654,548 + MIT1002_00601 0.81 +1.0 654,571 + MIT1002_00601 0.83 +0.2 654,615 + MIT1002_00601 0.85 -0.8 654,615 + MIT1002_00601 0.85 -0.9 654,615 + MIT1002_00601 0.85 -0.2 654,623 - MIT1002_00601 0.86 -0.6 654,682 - MIT1002_00601 0.90 -0.5 654,693 - -0.1 654,693 - -0.2 654,711 - +0.5 654,717 + -0.3 654,720 + +0.0 654,730 + -0.0 654,738 - +0.8 654,796 + +1.2 654,919 + +0.8 655,014 + -2.0 655,036 - +0.5 655,036 - +1.2 655,054 + +0.4 655,102 - +0.6 655,102 - +0.3 655,124 + -0.7 655,124 + +2.7 655,124 + -0.8 655,124 + -0.8 655,153 + +0.1 655,224 + +0.3 655,228 + -0.3 655,232 - -0.8 655,232 - +0.9 655,244 - -0.6 655,247 + +0.1 655,253 + -0.1 655,253 + -0.8 655,253 + +0.5 655,253 + -2.3 655,261 - +1.0 655,261 - +0.7 655,281 - +1.0 655,352 + MIT1002_00602 0.27 -0.3 655,574 - -1.0 655,629 + -0.2 655,675 + -0.4 655,675 + -0.8 655,675 + -0.4 655,683 - MIT1002_00603 0.11 +0.7 655,730 + MIT1002_00603 0.20 -0.8 655,738 - MIT1002_00603 0.21 +0.6 655,754 + MIT1002_00603 0.24 +11.5 655,754 + MIT1002_00603 0.24 -2.1 655,754 + MIT1002_00603 0.24 +1.4 655,771 + MIT1002_00603 0.27 -0.3 655,774 - MIT1002_00603 0.28 -0.3 655,827 + MIT1002_00603 0.38 -0.8 655,840 + MIT1002_00603 0.40 +0.4
Or see this region's nucleotide sequence