Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00528

Experiment: monoculture; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00527 and MIT1002_00528 are separated by 283 nucleotidesMIT1002_00528 and MIT1002_00529 are separated by 287 nucleotides MIT1002_00527: MIT1002_00527 - Prolyl tripeptidyl peptidase precursor, at 572,893 to 575,001 _00527 MIT1002_00528: MIT1002_00528 - putative membrane protein, at 575,285 to 575,617 _00528 MIT1002_00529: MIT1002_00529 - Thioredoxin, at 575,905 to 576,774 _00529 Position (kb) 575 576Strain fitness (log2 ratio) -2 -1 0 1 2 3at 574.338 kb on - strand, within MIT1002_00527at 574.364 kb on - strand, within MIT1002_00527at 574.372 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.396 kb on + strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.404 kb on - strand, within MIT1002_00527at 574.433 kb on - strand, within MIT1002_00527at 574.438 kb on - strand, within MIT1002_00527at 574.442 kb on + strand, within MIT1002_00527at 574.442 kb on + strand, within MIT1002_00527at 574.448 kb on + strand, within MIT1002_00527at 574.501 kb on + strand, within MIT1002_00527at 574.507 kb on + strand, within MIT1002_00527at 574.515 kb on - strand, within MIT1002_00527at 574.524 kb on + strand, within MIT1002_00527at 574.548 kb on + strand, within MIT1002_00527at 574.689 kb on - strand, within MIT1002_00527at 574.782 kb on - strand, within MIT1002_00527at 574.871 kb on - strandat 574.901 kb on + strandat 574.901 kb on + strandat 574.906 kb on + strandat 574.909 kb on - strandat 574.955 kb on - strandat 575.041 kb on - strandat 575.041 kb on - strandat 575.058 kb on + strandat 575.060 kb on + strandat 575.066 kb on - strandat 575.117 kb on - strandat 575.213 kb on - strandat 575.263 kb on - strandat 575.266 kb on + strandat 575.275 kb on - strandat 575.276 kb on + strandat 575.337 kb on - strand, within MIT1002_00528at 575.450 kb on - strand, within MIT1002_00528at 575.452 kb on - strand, within MIT1002_00528at 575.452 kb on - strand, within MIT1002_00528at 575.463 kb on + strand, within MIT1002_00528at 575.494 kb on + strand, within MIT1002_00528at 575.508 kb on - strand, within MIT1002_00528at 575.614 kb on + strandat 575.615 kb on + strandat 575.622 kb on - strandat 575.623 kb on - strandat 575.636 kb on + strandat 575.675 kb on + strandat 575.683 kb on - strandat 575.751 kb on + strandat 575.761 kb on - strandat 575.835 kb on + strandat 575.835 kb on + strandat 575.858 kb on + strandat 575.895 kb on + strandat 575.895 kb on + strandat 575.975 kb on + strandat 576.026 kb on + strand, within MIT1002_00529at 576.094 kb on + strand, within MIT1002_00529at 576.107 kb on - strand, within MIT1002_00529at 576.172 kb on - strand, within MIT1002_00529at 576.193 kb on + strand, within MIT1002_00529at 576.201 kb on - strand, within MIT1002_00529at 576.309 kb on - strand, within MIT1002_00529at 576.344 kb on + strand, within MIT1002_00529at 576.351 kb on + strand, within MIT1002_00529at 576.358 kb on - strand, within MIT1002_00529at 576.408 kb on - strand, within MIT1002_00529at 576.457 kb on + strand, within MIT1002_00529at 576.469 kb on + strand, within MIT1002_00529at 576.537 kb on + strand, within MIT1002_00529

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4
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574,338 - MIT1002_00527 0.69 +0.1
574,364 - MIT1002_00527 0.70 +0.1
574,372 + MIT1002_00527 0.70 -1.9
574,391 + MIT1002_00527 0.71 +0.2
574,391 + MIT1002_00527 0.71 -1.8
574,391 + MIT1002_00527 0.71 -0.6
574,391 + MIT1002_00527 0.71 +1.4
574,391 + MIT1002_00527 0.71 -0.7
574,391 + MIT1002_00527 0.71 +0.9
574,391 + MIT1002_00527 0.71 -0.8
574,391 + MIT1002_00527 0.71 +0.1
574,391 + MIT1002_00527 0.71 -0.4
574,391 + MIT1002_00527 0.71 +0.9
574,396 + MIT1002_00527 0.71 -0.6
574,399 - MIT1002_00527 0.71 +1.0
574,399 - MIT1002_00527 0.71 +0.6
574,399 - MIT1002_00527 0.71 +0.7
574,399 - MIT1002_00527 0.71 +0.1
574,399 - MIT1002_00527 0.71 -0.7
574,399 - MIT1002_00527 0.71 -0.2
574,399 - MIT1002_00527 0.71 +0.4
574,399 - MIT1002_00527 0.71 -0.7
574,399 - MIT1002_00527 0.71 -0.4
574,404 - MIT1002_00527 0.72 -0.4
574,433 - MIT1002_00527 0.73 +1.2
574,438 - MIT1002_00527 0.73 -1.1
574,442 + MIT1002_00527 0.73 +0.1
574,442 + MIT1002_00527 0.73 +0.7
574,448 + MIT1002_00527 0.74 -1.2
574,501 + MIT1002_00527 0.76 +0.6
574,507 + MIT1002_00527 0.77 +0.1
574,515 - MIT1002_00527 0.77 +0.2
574,524 + MIT1002_00527 0.77 -0.2
574,548 + MIT1002_00527 0.78 -0.5
574,689 - MIT1002_00527 0.85 -1.5
574,782 - MIT1002_00527 0.90 +0.3
574,871 - -0.1
574,901 + -0.3
574,901 + +1.2
574,906 + -1.4
574,909 - -0.2
574,955 - -0.6
575,041 - +1.4
575,041 - +0.4
575,058 + +2.0
575,060 + +1.0
575,066 - +0.2
575,117 - +3.3
575,213 - +0.6
575,263 - +2.2
575,266 + +0.3
575,275 - +1.4
575,276 + +0.6
575,337 - MIT1002_00528 0.16 -0.4
575,450 - MIT1002_00528 0.50 -0.8
575,452 - MIT1002_00528 0.50 +1.2
575,452 - MIT1002_00528 0.50 -0.1
575,463 + MIT1002_00528 0.53 -0.7
575,494 + MIT1002_00528 0.63 -0.1
575,508 - MIT1002_00528 0.67 +0.1
575,614 + +1.2
575,615 + -0.8
575,622 - -2.4
575,623 - -0.1
575,636 + -1.9
575,675 + +0.2
575,683 - +1.4
575,751 + +0.1
575,761 - -1.1
575,835 + +0.7
575,835 + -0.2
575,858 + +0.6
575,895 + +1.4
575,895 + -0.7
575,975 + +0.2
576,026 + MIT1002_00529 0.14 -0.8
576,094 + MIT1002_00529 0.22 -0.8
576,107 - MIT1002_00529 0.23 +0.3
576,172 - MIT1002_00529 0.31 +0.4
576,193 + MIT1002_00529 0.33 +2.9
576,201 - MIT1002_00529 0.34 +1.2
576,309 - MIT1002_00529 0.46 +1.1
576,344 + MIT1002_00529 0.50 -0.4
576,351 + MIT1002_00529 0.51 -0.2
576,358 - MIT1002_00529 0.52 +1.5
576,408 - MIT1002_00529 0.58 +0.4
576,457 + MIT1002_00529 0.63 -0.8
576,469 + MIT1002_00529 0.65 +0.4
576,537 + MIT1002_00529 0.73 +0.9

Or see this region's nucleotide sequence