Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00470

Experiment: monoculture; Experiment B, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00468 and MIT1002_00469 are separated by 37 nucleotidesMIT1002_00469 and MIT1002_00470 overlap by 4 nucleotidesMIT1002_00470 and MIT1002_00471 overlap by 4 nucleotides MIT1002_00468: MIT1002_00468 - Argininosuccinate synthase, at 511,935 to 513,146 _00468 MIT1002_00469: MIT1002_00469 - Ornithine carbamoyltransferase, at 513,184 to 514,095 _00469 MIT1002_00470: MIT1002_00470 - Acetylglutamate kinase, at 514,092 to 514,937 _00470 MIT1002_00471: MIT1002_00471 - N-acetyl-gamma-glutamyl-phosphate reductase, at 514,934 to 515,947 _00471 Position (kb) 514 515Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 513.107 kb on + strandat 513.112 kb on + strandat 513.112 kb on + strandat 513.120 kb on - strandat 513.232 kb on + strandat 513.308 kb on + strand, within MIT1002_00469at 513.326 kb on - strand, within MIT1002_00469at 513.356 kb on + strand, within MIT1002_00469at 513.356 kb on + strand, within MIT1002_00469at 513.393 kb on + strand, within MIT1002_00469at 513.401 kb on - strand, within MIT1002_00469at 513.439 kb on + strand, within MIT1002_00469at 513.439 kb on + strand, within MIT1002_00469at 513.447 kb on - strand, within MIT1002_00469at 513.447 kb on - strand, within MIT1002_00469at 513.461 kb on + strand, within MIT1002_00469at 513.461 kb on + strand, within MIT1002_00469at 513.461 kb on + strand, within MIT1002_00469at 513.469 kb on - strand, within MIT1002_00469at 513.469 kb on - strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.560 kb on - strand, within MIT1002_00469at 513.580 kb on + strand, within MIT1002_00469at 513.620 kb on - strand, within MIT1002_00469at 513.635 kb on + strand, within MIT1002_00469at 513.646 kb on + strand, within MIT1002_00469at 513.653 kb on - strand, within MIT1002_00469at 513.654 kb on - strand, within MIT1002_00469at 513.700 kb on + strand, within MIT1002_00469at 513.806 kb on + strand, within MIT1002_00469at 513.833 kb on - strand, within MIT1002_00469at 513.881 kb on + strand, within MIT1002_00469at 513.887 kb on - strand, within MIT1002_00469at 513.887 kb on - strand, within MIT1002_00469at 513.887 kb on - strand, within MIT1002_00469at 513.928 kb on + strand, within MIT1002_00469at 513.963 kb on + strand, within MIT1002_00469at 514.068 kb on + strandat 514.075 kb on + strandat 514.075 kb on + strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.089 kb on + strandat 514.134 kb on + strandat 514.134 kb on + strandat 514.142 kb on - strandat 514.159 kb on + strandat 514.167 kb on - strandat 514.169 kb on + strandat 514.177 kb on - strand, within MIT1002_00470at 514.189 kb on - strand, within MIT1002_00470at 514.297 kb on - strand, within MIT1002_00470at 514.317 kb on + strand, within MIT1002_00470at 514.325 kb on - strand, within MIT1002_00470at 514.428 kb on - strand, within MIT1002_00470at 514.487 kb on + strand, within MIT1002_00470at 514.488 kb on + strand, within MIT1002_00470at 514.496 kb on + strand, within MIT1002_00470at 514.587 kb on - strand, within MIT1002_00470at 514.592 kb on - strand, within MIT1002_00470at 514.600 kb on + strand, within MIT1002_00470at 514.616 kb on - strand, within MIT1002_00470at 514.647 kb on + strand, within MIT1002_00470at 514.655 kb on - strand, within MIT1002_00470at 514.655 kb on - strand, within MIT1002_00470at 514.655 kb on - strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.680 kb on - strand, within MIT1002_00470at 514.689 kb on + strand, within MIT1002_00470at 514.695 kb on + strand, within MIT1002_00470at 514.720 kb on + strand, within MIT1002_00470at 514.720 kb on + strand, within MIT1002_00470at 514.725 kb on + strand, within MIT1002_00470at 514.728 kb on - strand, within MIT1002_00470at 514.749 kb on - strand, within MIT1002_00470at 514.767 kb on + strand, within MIT1002_00470at 514.796 kb on + strand, within MIT1002_00470at 514.804 kb on - strand, within MIT1002_00470at 514.850 kb on + strand, within MIT1002_00470at 514.903 kb on - strandat 514.933 kb on + strandat 514.939 kb on + strandat 514.947 kb on - strandat 514.948 kb on - strandat 514.948 kb on - strandat 514.949 kb on + strandat 514.958 kb on - strandat 514.974 kb on + strandat 515.007 kb on - strandat 515.033 kb on + strandat 515.033 kb on + strandat 515.074 kb on - strand, within MIT1002_00471at 515.098 kb on - strand, within MIT1002_00471at 515.141 kb on + strand, within MIT1002_00471at 515.143 kb on - strand, within MIT1002_00471at 515.159 kb on - strand, within MIT1002_00471at 515.163 kb on + strand, within MIT1002_00471at 515.163 kb on + strand, within MIT1002_00471at 515.163 kb on + strand, within MIT1002_00471at 515.163 kb on + strand, within MIT1002_00471at 515.163 kb on + strand, within MIT1002_00471at 515.197 kb on - strand, within MIT1002_00471at 515.199 kb on + strand, within MIT1002_00471at 515.199 kb on + strand, within MIT1002_00471at 515.199 kb on + strand, within MIT1002_00471at 515.199 kb on + strand, within MIT1002_00471at 515.199 kb on + strand, within MIT1002_00471at 515.207 kb on - strand, within MIT1002_00471at 515.207 kb on - strand, within MIT1002_00471at 515.207 kb on - strand, within MIT1002_00471at 515.207 kb on - strand, within MIT1002_00471at 515.207 kb on - strand, within MIT1002_00471at 515.312 kb on + strand, within MIT1002_00471at 515.316 kb on + strand, within MIT1002_00471at 515.320 kb on - strand, within MIT1002_00471at 515.322 kb on + strand, within MIT1002_00471at 515.322 kb on + strand, within MIT1002_00471at 515.322 kb on + strand, within MIT1002_00471at 515.322 kb on - strand, within MIT1002_00471at 515.390 kb on + strand, within MIT1002_00471at 515.398 kb on - strand, within MIT1002_00471at 515.408 kb on - strand, within MIT1002_00471at 515.451 kb on + strand, within MIT1002_00471at 515.461 kb on + strand, within MIT1002_00471at 515.473 kb on + strand, within MIT1002_00471at 515.494 kb on - strand, within MIT1002_00471at 515.511 kb on - strand, within MIT1002_00471at 515.543 kb on + strand, within MIT1002_00471at 515.543 kb on + strand, within MIT1002_00471at 515.551 kb on - strand, within MIT1002_00471at 515.551 kb on - strand, within MIT1002_00471at 515.572 kb on - strand, within MIT1002_00471at 515.597 kb on - strand, within MIT1002_00471at 515.597 kb on - strand, within MIT1002_00471at 515.597 kb on - strand, within MIT1002_00471at 515.617 kb on + strand, within MIT1002_00471at 515.617 kb on + strand, within MIT1002_00471at 515.625 kb on - strand, within MIT1002_00471at 515.625 kb on - strand, within MIT1002_00471at 515.625 kb on - strand, within MIT1002_00471at 515.639 kb on - strand, within MIT1002_00471at 515.692 kb on - strand, within MIT1002_00471at 515.773 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.824 kb on - strand, within MIT1002_00471at 515.824 kb on - strand, within MIT1002_00471at 515.824 kb on - strand, within MIT1002_00471at 515.840 kb on - strand, within MIT1002_00471at 515.898 kb on + strandat 515.909 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4
remove
513,107 + -4.6
513,112 + -2.7
513,112 + -2.8
513,120 - -4.3
513,232 + -4.6
513,308 + MIT1002_00469 0.14 -5.7
513,326 - MIT1002_00469 0.16 -3.5
513,356 + MIT1002_00469 0.19 -2.9
513,356 + MIT1002_00469 0.19 -4.9
513,393 + MIT1002_00469 0.23 -1.9
513,401 - MIT1002_00469 0.24 -2.7
513,439 + MIT1002_00469 0.28 -0.4
513,439 + MIT1002_00469 0.28 -3.4
513,447 - MIT1002_00469 0.29 -2.5
513,447 - MIT1002_00469 0.29 -5.4
513,461 + MIT1002_00469 0.30 -3.8
513,461 + MIT1002_00469 0.30 -4.4
513,461 + MIT1002_00469 0.30 -1.4
513,469 - MIT1002_00469 0.31 -2.6
513,469 - MIT1002_00469 0.31 -4.6
513,552 + MIT1002_00469 0.40 -3.3
513,552 + MIT1002_00469 0.40 -3.9
513,552 + MIT1002_00469 0.40 -3.6
513,552 + MIT1002_00469 0.40 -4.8
513,560 - MIT1002_00469 0.41 -3.0
513,580 + MIT1002_00469 0.43 -2.5
513,620 - MIT1002_00469 0.48 -3.5
513,635 + MIT1002_00469 0.49 -3.3
513,646 + MIT1002_00469 0.51 -3.4
513,653 - MIT1002_00469 0.51 -2.2
513,654 - MIT1002_00469 0.52 -1.5
513,700 + MIT1002_00469 0.57 -5.9
513,806 + MIT1002_00469 0.68 -3.3
513,833 - MIT1002_00469 0.71 -2.4
513,881 + MIT1002_00469 0.76 -3.8
513,887 - MIT1002_00469 0.77 -3.3
513,887 - MIT1002_00469 0.77 -3.4
513,887 - MIT1002_00469 0.77 -3.6
513,928 + MIT1002_00469 0.82 -1.5
513,963 + MIT1002_00469 0.85 -3.6
514,068 + -2.8
514,075 + -2.8
514,075 + +0.1
514,083 - -3.7
514,083 - -0.6
514,083 - -3.0
514,083 - -2.6
514,083 - -0.6
514,083 - -4.6
514,083 - -5.3
514,089 + -6.6
514,134 + -3.9
514,134 + -5.4
514,142 - +1.2
514,159 + -4.3
514,167 - -2.2
514,169 + -2.3
514,177 - MIT1002_00470 0.10 -0.2
514,189 - MIT1002_00470 0.11 -1.5
514,297 - MIT1002_00470 0.24 -2.2
514,317 + MIT1002_00470 0.27 -0.9
514,325 - MIT1002_00470 0.28 -4.3
514,428 - MIT1002_00470 0.40 -2.3
514,487 + MIT1002_00470 0.47 -5.1
514,488 + MIT1002_00470 0.47 -4.2
514,496 + MIT1002_00470 0.48 -3.5
514,587 - MIT1002_00470 0.59 -3.3
514,592 - MIT1002_00470 0.59 -3.8
514,600 + MIT1002_00470 0.60 -4.3
514,616 - MIT1002_00470 0.62 -0.6
514,647 + MIT1002_00470 0.66 -2.3
514,655 - MIT1002_00470 0.67 -7.3
514,655 - MIT1002_00470 0.67 -4.7
514,655 - MIT1002_00470 0.67 -1.7
514,672 + MIT1002_00470 0.69 -3.1
514,672 + MIT1002_00470 0.69 -4.2
514,672 + MIT1002_00470 0.69 -3.0
514,672 + MIT1002_00470 0.69 -5.3
514,680 - MIT1002_00470 0.70 -3.3
514,689 + MIT1002_00470 0.71 -3.9
514,695 + MIT1002_00470 0.71 -3.7
514,720 + MIT1002_00470 0.74 -5.5
514,720 + MIT1002_00470 0.74 -3.6
514,725 + MIT1002_00470 0.75 -5.3
514,728 - MIT1002_00470 0.75 -3.3
514,749 - MIT1002_00470 0.78 -3.1
514,767 + MIT1002_00470 0.80 -4.2
514,796 + MIT1002_00470 0.83 -3.3
514,804 - MIT1002_00470 0.84 -4.1
514,850 + MIT1002_00470 0.90 -1.9
514,903 - -0.8
514,933 + -3.3
514,939 + -3.0
514,947 - +0.8
514,948 - -0.6
514,948 - +0.5
514,949 + -2.3
514,958 - -0.6
514,974 + -3.9
515,007 - -3.5
515,033 + -1.2
515,033 + -4.2
515,074 - MIT1002_00471 0.14 -3.6
515,098 - MIT1002_00471 0.16 -1.2
515,141 + MIT1002_00471 0.20 -2.8
515,143 - MIT1002_00471 0.21 -4.9
515,159 - MIT1002_00471 0.22 -3.9
515,163 + MIT1002_00471 0.23 -3.1
515,163 + MIT1002_00471 0.23 -3.9
515,163 + MIT1002_00471 0.23 -3.8
515,163 + MIT1002_00471 0.23 -3.4
515,163 + MIT1002_00471 0.23 -1.9
515,197 - MIT1002_00471 0.26 -3.5
515,199 + MIT1002_00471 0.26 -1.9
515,199 + MIT1002_00471 0.26 -3.0
515,199 + MIT1002_00471 0.26 -1.6
515,199 + MIT1002_00471 0.26 -3.7
515,199 + MIT1002_00471 0.26 -0.9
515,207 - MIT1002_00471 0.27 -1.4
515,207 - MIT1002_00471 0.27 -5.4
515,207 - MIT1002_00471 0.27 -1.1
515,207 - MIT1002_00471 0.27 -4.7
515,207 - MIT1002_00471 0.27 -3.4
515,312 + MIT1002_00471 0.37 -3.3
515,316 + MIT1002_00471 0.38 -7.2
515,320 - MIT1002_00471 0.38 -3.0
515,322 + MIT1002_00471 0.38 -2.3
515,322 + MIT1002_00471 0.38 -3.2
515,322 + MIT1002_00471 0.38 -8.0
515,322 - MIT1002_00471 0.38 -4.7
515,390 + MIT1002_00471 0.45 -2.4
515,398 - MIT1002_00471 0.46 +0.4
515,408 - MIT1002_00471 0.47 -3.9
515,451 + MIT1002_00471 0.51 -4.6
515,461 + MIT1002_00471 0.52 -2.2
515,473 + MIT1002_00471 0.53 -2.8
515,494 - MIT1002_00471 0.55 -4.3
515,511 - MIT1002_00471 0.57 -4.1
515,543 + MIT1002_00471 0.60 -5.5
515,543 + MIT1002_00471 0.60 -4.0
515,551 - MIT1002_00471 0.61 -6.9
515,551 - MIT1002_00471 0.61 -0.8
515,572 - MIT1002_00471 0.63 +0.4
515,597 - MIT1002_00471 0.65 -4.7
515,597 - MIT1002_00471 0.65 -4.5
515,597 - MIT1002_00471 0.65 -3.8
515,617 + MIT1002_00471 0.67 -3.6
515,617 + MIT1002_00471 0.67 -2.6
515,625 - MIT1002_00471 0.68 -4.2
515,625 - MIT1002_00471 0.68 -4.3
515,625 - MIT1002_00471 0.68 -5.6
515,639 - MIT1002_00471 0.70 -2.2
515,692 - MIT1002_00471 0.75 -4.5
515,773 + MIT1002_00471 0.83 -1.7
515,816 + MIT1002_00471 0.87 -7.8
515,816 + MIT1002_00471 0.87 +0.1
515,816 + MIT1002_00471 0.87 -3.8
515,816 + MIT1002_00471 0.87 -3.3
515,824 - MIT1002_00471 0.88 -3.9
515,824 - MIT1002_00471 0.88 -0.2
515,824 - MIT1002_00471 0.88 -3.9
515,840 - MIT1002_00471 0.89 -4.6
515,898 + -4.3
515,909 + -5.4

Or see this region's nucleotide sequence