Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00400

Experiment: monoculture; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00397 and MIT1002_00398 are separated by 241 nucleotidesMIT1002_00398 and MIT1002_00399 are separated by 21 nucleotidesMIT1002_00399 and MIT1002_00400 are separated by 60 nucleotidesMIT1002_00400 and MIT1002_00401 are separated by 408 nucleotides MIT1002_00397: MIT1002_00397 - hypothetical protein, at 426,034 to 426,885 _00397 MIT1002_00398: MIT1002_00398 - hypothetical protein, at 427,127 to 427,384 _00398 MIT1002_00399: MIT1002_00399 - hypothetical protein, at 427,406 to 427,714 _00399 MIT1002_00400: MIT1002_00400 - hypothetical protein, at 427,775 to 429,685 _00400 MIT1002_00401: MIT1002_00401 - Peptidyl-dipeptidase dcp, at 430,094 to 432,283 _00401 Position (kb) 427 428 429 430Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 426.836 kb on + strandat 426.844 kb on - strandat 426.895 kb on + strandat 426.948 kb on + strandat 426.981 kb on + strandat 427.002 kb on + strandat 427.043 kb on + strandat 427.065 kb on - strandat 427.069 kb on + strandat 427.092 kb on + strandat 427.228 kb on - strand, within MIT1002_00398at 427.365 kb on + strandat 427.439 kb on + strand, within MIT1002_00399at 427.475 kb on + strand, within MIT1002_00399at 427.520 kb on - strand, within MIT1002_00399at 427.633 kb on + strand, within MIT1002_00399at 427.672 kb on - strand, within MIT1002_00399at 427.673 kb on - strand, within MIT1002_00399at 427.757 kb on + strandat 427.780 kb on + strandat 427.780 kb on + strandat 427.788 kb on - strandat 427.795 kb on + strandat 427.803 kb on - strandat 427.968 kb on + strand, within MIT1002_00400at 427.976 kb on - strand, within MIT1002_00400at 427.976 kb on - strand, within MIT1002_00400at 428.090 kb on - strand, within MIT1002_00400at 428.111 kb on + strand, within MIT1002_00400at 428.119 kb on + strand, within MIT1002_00400at 428.128 kb on - strand, within MIT1002_00400at 428.149 kb on + strand, within MIT1002_00400at 428.157 kb on - strand, within MIT1002_00400at 428.162 kb on + strand, within MIT1002_00400at 428.298 kb on - strand, within MIT1002_00400at 428.300 kb on - strand, within MIT1002_00400at 428.308 kb on - strand, within MIT1002_00400at 428.347 kb on - strand, within MIT1002_00400at 428.444 kb on - strand, within MIT1002_00400at 428.448 kb on - strand, within MIT1002_00400at 428.509 kb on - strand, within MIT1002_00400at 428.515 kb on - strand, within MIT1002_00400at 428.576 kb on + strand, within MIT1002_00400at 428.708 kb on + strand, within MIT1002_00400at 428.716 kb on - strand, within MIT1002_00400at 428.757 kb on + strand, within MIT1002_00400at 428.844 kb on + strand, within MIT1002_00400at 428.859 kb on + strand, within MIT1002_00400at 428.867 kb on - strand, within MIT1002_00400at 428.872 kb on - strand, within MIT1002_00400at 428.980 kb on - strand, within MIT1002_00400at 428.989 kb on - strand, within MIT1002_00400at 428.992 kb on + strand, within MIT1002_00400at 428.992 kb on + strand, within MIT1002_00400at 429.048 kb on + strand, within MIT1002_00400at 429.048 kb on + strand, within MIT1002_00400at 429.056 kb on - strand, within MIT1002_00400at 429.056 kb on - strand, within MIT1002_00400at 429.137 kb on - strand, within MIT1002_00400at 429.205 kb on + strand, within MIT1002_00400at 429.213 kb on + strand, within MIT1002_00400at 429.221 kb on - strand, within MIT1002_00400at 429.221 kb on - strand, within MIT1002_00400at 429.243 kb on - strand, within MIT1002_00400at 429.416 kb on + strand, within MIT1002_00400at 429.424 kb on - strand, within MIT1002_00400at 429.480 kb on - strand, within MIT1002_00400at 429.489 kb on + strand, within MIT1002_00400at 429.496 kb on + strandat 429.496 kb on + strandat 429.504 kb on - strandat 429.510 kb on + strandat 429.510 kb on + strandat 429.513 kb on - strandat 429.532 kb on - strandat 429.727 kb on + strandat 429.768 kb on + strandat 429.776 kb on - strandat 429.776 kb on - strandat 429.776 kb on - strandat 429.776 kb on - strandat 429.778 kb on + strandat 429.778 kb on + strandat 429.778 kb on + strandat 429.778 kb on + strandat 429.778 kb on + strandat 429.778 kb on + strandat 429.783 kb on + strandat 429.783 kb on + strandat 429.786 kb on - strandat 429.791 kb on - strandat 429.791 kb on - strandat 429.868 kb on - strandat 429.887 kb on - strandat 430.026 kb on + strandat 430.054 kb on - strandat 430.078 kb on + strandat 430.078 kb on + strandat 430.086 kb on - strandat 430.086 kb on - strandat 430.091 kb on + strandat 430.190 kb on - strandat 430.280 kb on + strandat 430.280 kb on + strandat 430.280 kb on + strandat 430.280 kb on + strandat 430.288 kb on - strandat 430.314 kb on - strand, within MIT1002_00401at 430.316 kb on + strand, within MIT1002_00401at 430.316 kb on + strand, within MIT1002_00401at 430.333 kb on - strand, within MIT1002_00401at 430.338 kb on + strand, within MIT1002_00401at 430.338 kb on + strand, within MIT1002_00401at 430.338 kb on + strand, within MIT1002_00401at 430.343 kb on + strand, within MIT1002_00401at 430.346 kb on - strand, within MIT1002_00401at 430.346 kb on - strand, within MIT1002_00401at 430.447 kb on + strand, within MIT1002_00401at 430.508 kb on - strand, within MIT1002_00401at 430.543 kb on - strand, within MIT1002_00401at 430.553 kb on - strand, within MIT1002_00401at 430.618 kb on + strand, within MIT1002_00401at 430.653 kb on + strand, within MIT1002_00401at 430.653 kb on + strand, within MIT1002_00401at 430.653 kb on + strand, within MIT1002_00401at 430.661 kb on - strand, within MIT1002_00401at 430.665 kb on + strand, within MIT1002_00401at 430.673 kb on + strand, within MIT1002_00401at 430.673 kb on - strand, within MIT1002_00401at 430.673 kb on - strand, within MIT1002_00401

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4
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426,836 + -1.5
426,844 - +1.2
426,895 + +0.9
426,948 + -0.0
426,981 + -0.2
427,002 + -0.1
427,043 + -0.2
427,065 - -0.9
427,069 + -1.1
427,092 + -0.8
427,228 - MIT1002_00398 0.39 -0.7
427,365 + -0.2
427,439 + MIT1002_00399 0.11 -0.8
427,475 + MIT1002_00399 0.22 +0.2
427,520 - MIT1002_00399 0.37 -0.1
427,633 + MIT1002_00399 0.73 +0.1
427,672 - MIT1002_00399 0.86 +0.1
427,673 - MIT1002_00399 0.86 -0.5
427,757 + -0.0
427,780 + -0.6
427,780 + -2.1
427,788 - -1.0
427,795 + -0.4
427,803 - -0.2
427,968 + MIT1002_00400 0.10 +1.4
427,976 - MIT1002_00400 0.11 -2.6
427,976 - MIT1002_00400 0.11 -1.4
428,090 - MIT1002_00400 0.16 +0.2
428,111 + MIT1002_00400 0.18 -0.4
428,119 + MIT1002_00400 0.18 -0.2
428,128 - MIT1002_00400 0.18 +1.9
428,149 + MIT1002_00400 0.20 -0.9
428,157 - MIT1002_00400 0.20 -0.5
428,162 + MIT1002_00400 0.20 +0.2
428,298 - MIT1002_00400 0.27 +1.2
428,300 - MIT1002_00400 0.27 -0.9
428,308 - MIT1002_00400 0.28 +0.2
428,347 - MIT1002_00400 0.30 +0.3
428,444 - MIT1002_00400 0.35 -0.2
428,448 - MIT1002_00400 0.35 -0.7
428,509 - MIT1002_00400 0.38 +1.2
428,515 - MIT1002_00400 0.39 -0.6
428,576 + MIT1002_00400 0.42 -1.6
428,708 + MIT1002_00400 0.49 +0.1
428,716 - MIT1002_00400 0.49 +1.3
428,757 + MIT1002_00400 0.51 -1.3
428,844 + MIT1002_00400 0.56 -0.9
428,859 + MIT1002_00400 0.57 -0.5
428,867 - MIT1002_00400 0.57 -0.6
428,872 - MIT1002_00400 0.57 -1.8
428,980 - MIT1002_00400 0.63 +0.8
428,989 - MIT1002_00400 0.64 +0.7
428,992 + MIT1002_00400 0.64 +0.3
428,992 + MIT1002_00400 0.64 -0.6
429,048 + MIT1002_00400 0.67 -0.6
429,048 + MIT1002_00400 0.67 -0.5
429,056 - MIT1002_00400 0.67 -2.8
429,056 - MIT1002_00400 0.67 -0.1
429,137 - MIT1002_00400 0.71 +0.4
429,205 + MIT1002_00400 0.75 -0.5
429,213 + MIT1002_00400 0.75 -0.3
429,221 - MIT1002_00400 0.76 +0.1
429,221 - MIT1002_00400 0.76 -0.6
429,243 - MIT1002_00400 0.77 -0.4
429,416 + MIT1002_00400 0.86 +0.6
429,424 - MIT1002_00400 0.86 -0.7
429,480 - MIT1002_00400 0.89 +0.1
429,489 + MIT1002_00400 0.90 -1.8
429,496 + +0.0
429,496 + -0.1
429,504 - +0.4
429,510 + +0.1
429,510 + +0.0
429,513 - -0.4
429,532 - +1.5
429,727 + -0.2
429,768 + +1.1
429,776 - -0.8
429,776 - +0.7
429,776 - -0.0
429,776 - -1.5
429,778 + -1.4
429,778 + -0.1
429,778 + -0.2
429,778 + -0.7
429,778 + +0.1
429,778 + +0.6
429,783 + -0.2
429,783 + +0.9
429,786 - -0.2
429,791 - +0.2
429,791 - -0.3
429,868 - -0.1
429,887 - -3.2
430,026 + -1.8
430,054 - +0.2
430,078 + -0.7
430,078 + -0.2
430,086 - -0.2
430,086 - +1.2
430,091 + +0.3
430,190 - -0.3
430,280 + +2.1
430,280 + +0.3
430,280 + +0.2
430,280 + +2.2
430,288 - +0.4
430,314 - MIT1002_00401 0.10 -1.4
430,316 + MIT1002_00401 0.10 -0.0
430,316 + MIT1002_00401 0.10 +1.1
430,333 - MIT1002_00401 0.11 +1.0
430,338 + MIT1002_00401 0.11 -0.1
430,338 + MIT1002_00401 0.11 -1.9
430,338 + MIT1002_00401 0.11 -0.5
430,343 + MIT1002_00401 0.11 +0.3
430,346 - MIT1002_00401 0.12 -0.8
430,346 - MIT1002_00401 0.12 +1.4
430,447 + MIT1002_00401 0.16 -0.9
430,508 - MIT1002_00401 0.19 -1.5
430,543 - MIT1002_00401 0.21 -0.4
430,553 - MIT1002_00401 0.21 -0.1
430,618 + MIT1002_00401 0.24 -0.2
430,653 + MIT1002_00401 0.26 -0.8
430,653 + MIT1002_00401 0.26 +0.4
430,653 + MIT1002_00401 0.26 -1.2
430,661 - MIT1002_00401 0.26 -1.8
430,665 + MIT1002_00401 0.26 -0.6
430,673 + MIT1002_00401 0.26 +0.1
430,673 - MIT1002_00401 0.26 -0.9
430,673 - MIT1002_00401 0.26 +1.6

Or see this region's nucleotide sequence