Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44095

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS44085 and QEN71_RS44090 are separated by 4 nucleotidesQEN71_RS44090 and QEN71_RS44095 are separated by 2 nucleotidesQEN71_RS44095 and QEN71_RS44100 overlap by 4 nucleotides QEN71_RS44085: QEN71_RS44085 - type II secretory pathway protein, at 291,706 to 293,337 _RS44085 QEN71_RS44090: QEN71_RS44090 - toxin co-regulated pilus biosynthesis Q family protein, at 293,342 to 293,962 _RS44090 QEN71_RS44095: QEN71_RS44095 - lytic transglycosylase domain-containing protein, at 293,965 to 294,393 _RS44095 QEN71_RS44100: QEN71_RS44100 - TrbG/VirB9 family P-type conjugative transfer protein, at 294,390 to 295,667 _RS44100 Position (kb) 293 294 295Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 293.129 kb on + strand, within QEN71_RS44085at 293.130 kb on - strand, within QEN71_RS44085at 293.130 kb on - strand, within QEN71_RS44085at 293.170 kb on + strand, within QEN71_RS44085at 293.170 kb on + strand, within QEN71_RS44085at 293.170 kb on + strand, within QEN71_RS44085at 293.171 kb on - strand, within QEN71_RS44085at 293.243 kb on + strandat 293.243 kb on + strandat 293.244 kb on - strandat 293.643 kb on - strand, within QEN71_RS44090at 293.681 kb on + strand, within QEN71_RS44090at 293.765 kb on + strand, within QEN71_RS44090at 293.765 kb on + strand, within QEN71_RS44090at 293.766 kb on - strand, within QEN71_RS44090at 293.807 kb on + strand, within QEN71_RS44090at 293.807 kb on + strand, within QEN71_RS44090at 293.808 kb on - strand, within QEN71_RS44090at 293.808 kb on - strand, within QEN71_RS44090at 293.808 kb on - strand, within QEN71_RS44090at 293.872 kb on - strand, within QEN71_RS44090at 293.872 kb on - strand, within QEN71_RS44090at 293.872 kb on - strand, within QEN71_RS44090at 293.872 kb on - strand, within QEN71_RS44090at 293.872 kb on - strand, within QEN71_RS44090at 293.954 kb on + strandat 293.955 kb on - strandat 293.955 kb on - strandat 293.995 kb on - strandat 293.995 kb on - strandat 293.998 kb on - strandat 294.041 kb on + strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.110 kb on + strand, within QEN71_RS44095at 294.111 kb on - strand, within QEN71_RS44095at 294.111 kb on - strand, within QEN71_RS44095at 294.148 kb on + strand, within QEN71_RS44095at 294.149 kb on - strand, within QEN71_RS44095at 294.249 kb on + strand, within QEN71_RS44095at 294.249 kb on + strand, within QEN71_RS44095at 294.249 kb on + strand, within QEN71_RS44095at 294.269 kb on - strand, within QEN71_RS44095at 294.269 kb on - strand, within QEN71_RS44095at 294.370 kb on + strandat 294.371 kb on - strandat 294.544 kb on + strand, within QEN71_RS44100at 294.544 kb on + strand, within QEN71_RS44100at 294.544 kb on + strand, within QEN71_RS44100at 294.544 kb on + strand, within QEN71_RS44100at 294.544 kb on + strand, within QEN71_RS44100at 294.544 kb on + strand, within QEN71_RS44100at 294.545 kb on - strand, within QEN71_RS44100at 294.547 kb on + strand, within QEN71_RS44100at 294.547 kb on + strand, within QEN71_RS44100at 294.548 kb on - strand, within QEN71_RS44100at 294.628 kb on + strand, within QEN71_RS44100at 294.628 kb on + strand, within QEN71_RS44100at 294.628 kb on + strand, within QEN71_RS44100at 294.628 kb on + strand, within QEN71_RS44100at 294.629 kb on - strand, within QEN71_RS44100at 294.629 kb on - strand, within QEN71_RS44100at 294.672 kb on - strand, within QEN71_RS44100at 294.692 kb on - strand, within QEN71_RS44100at 294.878 kb on + strand, within QEN71_RS44100at 295.021 kb on + strand, within QEN71_RS44100at 295.021 kb on + strand, within QEN71_RS44100at 295.021 kb on + strand, within QEN71_RS44100at 295.021 kb on + strand, within QEN71_RS44100at 295.021 kb on + strand, within QEN71_RS44100at 295.021 kb on + strand, within QEN71_RS44100at 295.021 kb on + strand, within QEN71_RS44100at 295.022 kb on - strand, within QEN71_RS44100at 295.022 kb on - strand, within QEN71_RS44100at 295.022 kb on - strand, within QEN71_RS44100at 295.022 kb on - strand, within QEN71_RS44100at 295.022 kb on - strand, within QEN71_RS44100at 295.083 kb on + strand, within QEN71_RS44100at 295.084 kb on - strand, within QEN71_RS44100at 295.094 kb on - strand, within QEN71_RS44100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
293,129 + QEN71_RS44085 0.87 -0.5
293,130 - QEN71_RS44085 0.87 -0.2
293,130 - QEN71_RS44085 0.87 +0.2
293,170 + QEN71_RS44085 0.90 -1.1
293,170 + QEN71_RS44085 0.90 -0.5
293,170 + QEN71_RS44085 0.90 -2.6
293,171 - QEN71_RS44085 0.90 -2.9
293,243 + +1.7
293,243 + +0.2
293,244 - -0.8
293,643 - QEN71_RS44090 0.48 +0.5
293,681 + QEN71_RS44090 0.55 -0.7
293,765 + QEN71_RS44090 0.68 +0.8
293,765 + QEN71_RS44090 0.68 -0.5
293,766 - QEN71_RS44090 0.68 +0.5
293,807 + QEN71_RS44090 0.75 +0.4
293,807 + QEN71_RS44090 0.75 +0.8
293,808 - QEN71_RS44090 0.75 -0.9
293,808 - QEN71_RS44090 0.75 -1.6
293,808 - QEN71_RS44090 0.75 +0.1
293,872 - QEN71_RS44090 0.85 -0.2
293,872 - QEN71_RS44090 0.85 -1.6
293,872 - QEN71_RS44090 0.85 +1.2
293,872 - QEN71_RS44090 0.85 -1.8
293,872 - QEN71_RS44090 0.85 +0.8
293,954 + -3.0
293,955 - -0.0
293,955 - +1.7
293,995 - +0.8
293,995 - +0.4
293,998 - +0.2
294,041 + QEN71_RS44095 0.18 +0.4
294,042 - QEN71_RS44095 0.18 +0.3
294,042 - QEN71_RS44095 0.18 -1.3
294,042 - QEN71_RS44095 0.18 +1.3
294,042 - QEN71_RS44095 0.18 +2.2
294,042 - QEN71_RS44095 0.18 -0.1
294,042 - QEN71_RS44095 0.18 +0.8
294,042 - QEN71_RS44095 0.18 -1.0
294,106 + QEN71_RS44095 0.33 -0.0
294,106 + QEN71_RS44095 0.33 +0.3
294,106 + QEN71_RS44095 0.33 -1.1
294,106 + QEN71_RS44095 0.33 -0.6
294,106 + QEN71_RS44095 0.33 +1.6
294,106 + QEN71_RS44095 0.33 +1.7
294,106 + QEN71_RS44095 0.33 -0.0
294,106 + QEN71_RS44095 0.33 +0.2
294,106 + QEN71_RS44095 0.33 +0.2
294,106 + QEN71_RS44095 0.33 -0.8
294,106 + QEN71_RS44095 0.33 -1.2
294,106 + QEN71_RS44095 0.33 -0.5
294,106 + QEN71_RS44095 0.33 +0.2
294,107 - QEN71_RS44095 0.33 -0.8
294,107 - QEN71_RS44095 0.33 -0.3
294,107 - QEN71_RS44095 0.33 -0.8
294,107 - QEN71_RS44095 0.33 +0.4
294,107 - QEN71_RS44095 0.33 +0.1
294,107 - QEN71_RS44095 0.33 -0.6
294,107 - QEN71_RS44095 0.33 +0.5
294,110 + QEN71_RS44095 0.34 +0.4
294,111 - QEN71_RS44095 0.34 -1.0
294,111 - QEN71_RS44095 0.34 +0.8
294,148 + QEN71_RS44095 0.43 -0.0
294,149 - QEN71_RS44095 0.43 +0.7
294,249 + QEN71_RS44095 0.66 -1.0
294,249 + QEN71_RS44095 0.66 -0.7
294,249 + QEN71_RS44095 0.66 +0.3
294,269 - QEN71_RS44095 0.71 -0.0
294,269 - QEN71_RS44095 0.71 -0.8
294,370 + -0.3
294,371 - -0.4
294,544 + QEN71_RS44100 0.12 -0.3
294,544 + QEN71_RS44100 0.12 -1.6
294,544 + QEN71_RS44100 0.12 -0.0
294,544 + QEN71_RS44100 0.12 -0.8
294,544 + QEN71_RS44100 0.12 -0.6
294,544 + QEN71_RS44100 0.12 +0.1
294,545 - QEN71_RS44100 0.12 +0.1
294,547 + QEN71_RS44100 0.12 -0.3
294,547 + QEN71_RS44100 0.12 +0.1
294,548 - QEN71_RS44100 0.12 +0.4
294,628 + QEN71_RS44100 0.19 +0.6
294,628 + QEN71_RS44100 0.19 -0.3
294,628 + QEN71_RS44100 0.19 -0.3
294,628 + QEN71_RS44100 0.19 -1.0
294,629 - QEN71_RS44100 0.19 -0.4
294,629 - QEN71_RS44100 0.19 +1.6
294,672 - QEN71_RS44100 0.22 -0.4
294,692 - QEN71_RS44100 0.24 -2.3
294,878 + QEN71_RS44100 0.38 +0.6
295,021 + QEN71_RS44100 0.49 -0.6
295,021 + QEN71_RS44100 0.49 -1.1
295,021 + QEN71_RS44100 0.49 +2.0
295,021 + QEN71_RS44100 0.49 -0.3
295,021 + QEN71_RS44100 0.49 -0.1
295,021 + QEN71_RS44100 0.49 -0.8
295,021 + QEN71_RS44100 0.49 -0.4
295,022 - QEN71_RS44100 0.49 +0.4
295,022 - QEN71_RS44100 0.49 +0.4
295,022 - QEN71_RS44100 0.49 -0.3
295,022 - QEN71_RS44100 0.49 +0.3
295,022 - QEN71_RS44100 0.49 -0.1
295,083 + QEN71_RS44100 0.54 -0.7
295,084 - QEN71_RS44100 0.54 -0.0
295,094 - QEN71_RS44100 0.55 -0.0

Or see this region's nucleotide sequence