Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39575

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39570 and QEN71_RS39575 are separated by 67 nucleotidesQEN71_RS39575 and QEN71_RS39580 are separated by 226 nucleotides QEN71_RS39570: QEN71_RS39570 - catalase family peroxidase, at 2,264,028 to 2,265,041 _RS39570 QEN71_RS39575: QEN71_RS39575 - FAD-dependent oxidoreductase, at 2,265,109 to 2,266,635 _RS39575 QEN71_RS39580: QEN71_RS39580 - argininosuccinate lyase, at 2,266,862 to 2,268,361 _RS39580 Position (kb) 2265 2266 2267Strain fitness (log2 ratio) -2 -1 0 1 2at 2264.136 kb on + strand, within QEN71_RS39570at 2264.137 kb on - strand, within QEN71_RS39570at 2264.137 kb on - strand, within QEN71_RS39570at 2264.173 kb on - strand, within QEN71_RS39570at 2264.182 kb on - strand, within QEN71_RS39570at 2264.586 kb on - strand, within QEN71_RS39570at 2264.613 kb on + strand, within QEN71_RS39570at 2264.613 kb on + strand, within QEN71_RS39570at 2264.613 kb on + strand, within QEN71_RS39570at 2264.614 kb on - strand, within QEN71_RS39570at 2264.614 kb on - strand, within QEN71_RS39570at 2264.616 kb on + strand, within QEN71_RS39570at 2264.616 kb on + strand, within QEN71_RS39570at 2264.617 kb on - strand, within QEN71_RS39570at 2264.633 kb on + strand, within QEN71_RS39570at 2264.673 kb on + strand, within QEN71_RS39570at 2264.673 kb on + strand, within QEN71_RS39570at 2264.674 kb on - strand, within QEN71_RS39570at 2264.674 kb on - strand, within QEN71_RS39570at 2264.674 kb on - strand, within QEN71_RS39570at 2264.674 kb on - strand, within QEN71_RS39570at 2264.869 kb on + strand, within QEN71_RS39570at 2264.870 kb on - strand, within QEN71_RS39570at 2264.971 kb on + strandat 2264.972 kb on - strandat 2265.044 kb on - strandat 2265.096 kb on - strandat 2265.096 kb on - strandat 2265.097 kb on + strandat 2265.097 kb on + strandat 2265.098 kb on - strandat 2265.098 kb on - strandat 2265.098 kb on - strandat 2265.165 kb on - strandat 2265.278 kb on + strand, within QEN71_RS39575at 2265.279 kb on - strand, within QEN71_RS39575at 2265.279 kb on - strand, within QEN71_RS39575at 2265.297 kb on - strand, within QEN71_RS39575at 2265.297 kb on - strand, within QEN71_RS39575at 2265.297 kb on - strand, within QEN71_RS39575at 2265.297 kb on - strand, within QEN71_RS39575at 2265.420 kb on + strand, within QEN71_RS39575at 2265.485 kb on + strand, within QEN71_RS39575at 2265.485 kb on + strand, within QEN71_RS39575at 2265.709 kb on + strand, within QEN71_RS39575at 2265.709 kb on + strand, within QEN71_RS39575at 2265.710 kb on - strand, within QEN71_RS39575at 2265.710 kb on - strand, within QEN71_RS39575at 2265.710 kb on - strand, within QEN71_RS39575at 2265.710 kb on - strand, within QEN71_RS39575at 2265.882 kb on + strand, within QEN71_RS39575at 2265.882 kb on + strand, within QEN71_RS39575at 2265.883 kb on - strand, within QEN71_RS39575at 2265.883 kb on - strand, within QEN71_RS39575at 2265.959 kb on + strand, within QEN71_RS39575at 2266.016 kb on - strand, within QEN71_RS39575at 2266.058 kb on + strand, within QEN71_RS39575at 2266.059 kb on - strand, within QEN71_RS39575at 2266.112 kb on + strand, within QEN71_RS39575at 2266.185 kb on - strand, within QEN71_RS39575at 2266.427 kb on - strand, within QEN71_RS39575at 2266.427 kb on - strand, within QEN71_RS39575at 2266.469 kb on + strand, within QEN71_RS39575at 2266.469 kb on + strand, within QEN71_RS39575at 2266.470 kb on - strand, within QEN71_RS39575at 2266.470 kb on - strand, within QEN71_RS39575at 2266.477 kb on - strand, within QEN71_RS39575at 2266.477 kb on - strand, within QEN71_RS39575at 2266.673 kb on + strandat 2266.674 kb on - strandat 2266.784 kb on - strandat 2266.784 kb on - strandat 2266.784 kb on - strandat 2266.815 kb on - strandat 2266.815 kb on - strandat 2266.878 kb on + strandat 2267.310 kb on - strand, within QEN71_RS39580at 2267.310 kb on - strand, within QEN71_RS39580at 2267.338 kb on + strand, within QEN71_RS39580at 2267.338 kb on + strand, within QEN71_RS39580at 2267.338 kb on + strand, within QEN71_RS39580at 2267.338 kb on + strand, within QEN71_RS39580at 2267.338 kb on + strand, within QEN71_RS39580at 2267.342 kb on + strand, within QEN71_RS39580at 2267.342 kb on + strand, within QEN71_RS39580at 2267.342 kb on + strand, within QEN71_RS39580at 2267.343 kb on - strand, within QEN71_RS39580at 2267.352 kb on - strand, within QEN71_RS39580at 2267.493 kb on - strand, within QEN71_RS39580at 2267.493 kb on - strand, within QEN71_RS39580at 2267.493 kb on - strand, within QEN71_RS39580at 2267.526 kb on - strand, within QEN71_RS39580at 2267.633 kb on + strand, within QEN71_RS39580at 2267.633 kb on + strand, within QEN71_RS39580at 2267.634 kb on - strand, within QEN71_RS39580

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,264,136 + QEN71_RS39570 0.11 +0.4
2,264,137 - QEN71_RS39570 0.11 +2.1
2,264,137 - QEN71_RS39570 0.11 -0.1
2,264,173 - QEN71_RS39570 0.14 -0.0
2,264,182 - QEN71_RS39570 0.15 +1.7
2,264,586 - QEN71_RS39570 0.55 +0.1
2,264,613 + QEN71_RS39570 0.58 +0.7
2,264,613 + QEN71_RS39570 0.58 +0.8
2,264,613 + QEN71_RS39570 0.58 -1.2
2,264,614 - QEN71_RS39570 0.58 -0.8
2,264,614 - QEN71_RS39570 0.58 +0.5
2,264,616 + QEN71_RS39570 0.58 +0.1
2,264,616 + QEN71_RS39570 0.58 +0.5
2,264,617 - QEN71_RS39570 0.58 +0.2
2,264,633 + QEN71_RS39570 0.60 +0.3
2,264,673 + QEN71_RS39570 0.64 -0.3
2,264,673 + QEN71_RS39570 0.64 -0.7
2,264,674 - QEN71_RS39570 0.64 -0.7
2,264,674 - QEN71_RS39570 0.64 +1.2
2,264,674 - QEN71_RS39570 0.64 +0.8
2,264,674 - QEN71_RS39570 0.64 -0.1
2,264,869 + QEN71_RS39570 0.83 -0.9
2,264,870 - QEN71_RS39570 0.83 -0.2
2,264,971 + +0.9
2,264,972 - +0.4
2,265,044 - -0.1
2,265,096 - -1.7
2,265,096 - -0.0
2,265,097 + -0.4
2,265,097 + -1.8
2,265,098 - +1.9
2,265,098 - +0.3
2,265,098 - -0.4
2,265,165 - -1.4
2,265,278 + QEN71_RS39575 0.11 -0.6
2,265,279 - QEN71_RS39575 0.11 +0.5
2,265,279 - QEN71_RS39575 0.11 -0.4
2,265,297 - QEN71_RS39575 0.12 +0.0
2,265,297 - QEN71_RS39575 0.12 -0.5
2,265,297 - QEN71_RS39575 0.12 -0.9
2,265,297 - QEN71_RS39575 0.12 +0.7
2,265,420 + QEN71_RS39575 0.20 +0.6
2,265,485 + QEN71_RS39575 0.25 +0.1
2,265,485 + QEN71_RS39575 0.25 -1.5
2,265,709 + QEN71_RS39575 0.39 +0.0
2,265,709 + QEN71_RS39575 0.39 +0.6
2,265,710 - QEN71_RS39575 0.39 +0.9
2,265,710 - QEN71_RS39575 0.39 -1.3
2,265,710 - QEN71_RS39575 0.39 -1.5
2,265,710 - QEN71_RS39575 0.39 +0.2
2,265,882 + QEN71_RS39575 0.51 -2.4
2,265,882 + QEN71_RS39575 0.51 -1.8
2,265,883 - QEN71_RS39575 0.51 +0.7
2,265,883 - QEN71_RS39575 0.51 -0.8
2,265,959 + QEN71_RS39575 0.56 +0.5
2,266,016 - QEN71_RS39575 0.59 -0.2
2,266,058 + QEN71_RS39575 0.62 -0.3
2,266,059 - QEN71_RS39575 0.62 +0.6
2,266,112 + QEN71_RS39575 0.66 -0.4
2,266,185 - QEN71_RS39575 0.70 -0.4
2,266,427 - QEN71_RS39575 0.86 -0.8
2,266,427 - QEN71_RS39575 0.86 -0.4
2,266,469 + QEN71_RS39575 0.89 +0.9
2,266,469 + QEN71_RS39575 0.89 -1.1
2,266,470 - QEN71_RS39575 0.89 +0.9
2,266,470 - QEN71_RS39575 0.89 +1.6
2,266,477 - QEN71_RS39575 0.90 -0.5
2,266,477 - QEN71_RS39575 0.90 +0.9
2,266,673 + +0.7
2,266,674 - -1.0
2,266,784 - +0.3
2,266,784 - -0.9
2,266,784 - +1.4
2,266,815 - -0.3
2,266,815 - +1.2
2,266,878 + -1.0
2,267,310 - QEN71_RS39580 0.30 -0.1
2,267,310 - QEN71_RS39580 0.30 -0.8
2,267,338 + QEN71_RS39580 0.32 +0.4
2,267,338 + QEN71_RS39580 0.32 -0.2
2,267,338 + QEN71_RS39580 0.32 -0.4
2,267,338 + QEN71_RS39580 0.32 -0.2
2,267,338 + QEN71_RS39580 0.32 -0.9
2,267,342 + QEN71_RS39580 0.32 -0.9
2,267,342 + QEN71_RS39580 0.32 -0.5
2,267,342 + QEN71_RS39580 0.32 -0.5
2,267,343 - QEN71_RS39580 0.32 +0.0
2,267,352 - QEN71_RS39580 0.33 +0.3
2,267,493 - QEN71_RS39580 0.42 +0.8
2,267,493 - QEN71_RS39580 0.42 +0.3
2,267,493 - QEN71_RS39580 0.42 +2.1
2,267,526 - QEN71_RS39580 0.44 -0.2
2,267,633 + QEN71_RS39580 0.51 +0.0
2,267,633 + QEN71_RS39580 0.51 -0.9
2,267,634 - QEN71_RS39580 0.51 +0.2

Or see this region's nucleotide sequence