Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39560

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS39550 and QEN71_RS39555 overlap by 4 nucleotidesQEN71_RS39555 and QEN71_RS39560 overlap by 8 nucleotidesQEN71_RS39560 and QEN71_RS39565 overlap by 4 nucleotidesQEN71_RS39565 and QEN71_RS39570 are separated by 90 nucleotides QEN71_RS39550: QEN71_RS39550 - AraC family transcriptional regulator, at 2,261,125 to 2,261,958 _RS39550 QEN71_RS39555: QEN71_RS39555 - NAD(P)H-dependent oxidoreductase, at 2,261,955 to 2,262,677 _RS39555 QEN71_RS39560: QEN71_RS39560 - enoyl-CoA hydratase-related protein, at 2,262,670 to 2,263,404 _RS39560 QEN71_RS39565: QEN71_RS39565 - DUF2000 domain-containing protein, at 2,263,401 to 2,263,937 _RS39565 QEN71_RS39570: QEN71_RS39570 - catalase family peroxidase, at 2,264,028 to 2,265,041 _RS39570 Position (kb) 2262 2263 2264Strain fitness (log2 ratio) -2 -1 0 1 2at 2261.998 kb on + strandat 2261.998 kb on + strandat 2262.148 kb on + strand, within QEN71_RS39555at 2262.289 kb on + strand, within QEN71_RS39555at 2262.289 kb on + strand, within QEN71_RS39555at 2262.307 kb on + strand, within QEN71_RS39555at 2262.308 kb on - strand, within QEN71_RS39555at 2262.484 kb on + strand, within QEN71_RS39555at 2262.485 kb on - strand, within QEN71_RS39555at 2262.494 kb on - strand, within QEN71_RS39555at 2262.494 kb on - strand, within QEN71_RS39555at 2262.556 kb on + strand, within QEN71_RS39555at 2262.557 kb on - strand, within QEN71_RS39555at 2262.557 kb on - strand, within QEN71_RS39555at 2262.557 kb on - strand, within QEN71_RS39555at 2263.055 kb on + strand, within QEN71_RS39560at 2263.056 kb on - strand, within QEN71_RS39560at 2263.264 kb on + strand, within QEN71_RS39560at 2263.264 kb on + strand, within QEN71_RS39560at 2263.433 kb on + strandat 2263.434 kb on - strandat 2263.474 kb on + strand, within QEN71_RS39565at 2263.526 kb on - strand, within QEN71_RS39565at 2263.664 kb on + strand, within QEN71_RS39565at 2263.664 kb on + strand, within QEN71_RS39565at 2263.848 kb on + strand, within QEN71_RS39565at 2263.889 kb on + strandat 2263.889 kb on + strandat 2263.890 kb on - strandat 2263.979 kb on - strandat 2263.979 kb on - strandat 2263.979 kb on - strandat 2264.080 kb on - strandat 2264.136 kb on + strand, within QEN71_RS39570at 2264.137 kb on - strand, within QEN71_RS39570at 2264.137 kb on - strand, within QEN71_RS39570at 2264.173 kb on - strand, within QEN71_RS39570at 2264.182 kb on - strand, within QEN71_RS39570

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
2,261,998 + -0.1
2,261,998 + +0.8
2,262,148 + QEN71_RS39555 0.27 +0.7
2,262,289 + QEN71_RS39555 0.46 +0.4
2,262,289 + QEN71_RS39555 0.46 +0.8
2,262,307 + QEN71_RS39555 0.49 +0.2
2,262,308 - QEN71_RS39555 0.49 +0.3
2,262,484 + QEN71_RS39555 0.73 +1.2
2,262,485 - QEN71_RS39555 0.73 +0.7
2,262,494 - QEN71_RS39555 0.75 -0.9
2,262,494 - QEN71_RS39555 0.75 +0.4
2,262,556 + QEN71_RS39555 0.83 -2.3
2,262,557 - QEN71_RS39555 0.83 +0.4
2,262,557 - QEN71_RS39555 0.83 -0.0
2,262,557 - QEN71_RS39555 0.83 +0.5
2,263,055 + QEN71_RS39560 0.52 -0.3
2,263,056 - QEN71_RS39560 0.53 +0.3
2,263,264 + QEN71_RS39560 0.81 +0.2
2,263,264 + QEN71_RS39560 0.81 +0.1
2,263,433 + -0.4
2,263,434 - +0.1
2,263,474 + QEN71_RS39565 0.14 +0.9
2,263,526 - QEN71_RS39565 0.23 -0.0
2,263,664 + QEN71_RS39565 0.49 +0.1
2,263,664 + QEN71_RS39565 0.49 +2.3
2,263,848 + QEN71_RS39565 0.83 +0.9
2,263,889 + -1.1
2,263,889 + +0.1
2,263,890 - -1.2
2,263,979 - +0.5
2,263,979 - -1.1
2,263,979 - -0.4
2,264,080 - -0.6
2,264,136 + QEN71_RS39570 0.11 +0.4
2,264,137 - QEN71_RS39570 0.11 +2.1
2,264,137 - QEN71_RS39570 0.11 -0.1
2,264,173 - QEN71_RS39570 0.14 -0.0
2,264,182 - QEN71_RS39570 0.15 +1.7

Or see this region's nucleotide sequence