Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37630

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37620 and QEN71_RS37625 are separated by 56 nucleotidesQEN71_RS37625 and QEN71_RS37630 are separated by 74 nucleotidesQEN71_RS37630 and QEN71_RS37635 overlap by 4 nucleotidesQEN71_RS37635 and QEN71_RS37640 overlap by 43 nucleotidesQEN71_RS37640 and QEN71_RS37645 are separated by 108 nucleotides QEN71_RS37620: QEN71_RS37620 - alpha/beta hydrolase, at 1,809,962 to 1,810,726 _RS37620 QEN71_RS37625: QEN71_RS37625 - hypothetical protein, at 1,810,783 to 1,811,052 _RS37625 QEN71_RS37630: QEN71_RS37630 - DUF692 domain-containing protein, at 1,811,127 to 1,812,005 _RS37630 QEN71_RS37635: QEN71_RS37635 - DNA-binding domain-containing protein, at 1,812,002 to 1,812,754 _RS37635 QEN71_RS37640: QEN71_RS37640 - tautomerase family protein, at 1,812,712 to 1,812,861 _RS37640 QEN71_RS37645: QEN71_RS37645 - organic hydroperoxide resistance protein, at 1,812,970 to 1,813,395 _RS37645 Position (kb) 1811 1812 1813Strain fitness (log2 ratio) -1 0 1at 1810.137 kb on - strand, within QEN71_RS37620at 1810.137 kb on - strand, within QEN71_RS37620at 1810.409 kb on + strand, within QEN71_RS37620at 1810.526 kb on + strand, within QEN71_RS37620at 1810.527 kb on - strand, within QEN71_RS37620at 1810.527 kb on - strand, within QEN71_RS37620at 1810.557 kb on - strand, within QEN71_RS37620at 1810.613 kb on + strand, within QEN71_RS37620at 1811.104 kb on + strandat 1811.104 kb on + strandat 1811.105 kb on - strandat 1811.106 kb on + strandat 1811.106 kb on + strandat 1811.107 kb on - strandat 1811.475 kb on + strand, within QEN71_RS37630at 1811.568 kb on + strand, within QEN71_RS37630at 1811.663 kb on + strand, within QEN71_RS37630at 1811.664 kb on - strand, within QEN71_RS37630at 1811.664 kb on - strand, within QEN71_RS37630at 1811.664 kb on - strand, within QEN71_RS37630at 1811.827 kb on - strand, within QEN71_RS37630at 1811.943 kb on + strandat 1812.035 kb on - strandat 1812.120 kb on - strand, within QEN71_RS37635at 1812.120 kb on - strand, within QEN71_RS37635at 1812.120 kb on - strand, within QEN71_RS37635at 1812.120 kb on - strand, within QEN71_RS37635at 1812.120 kb on - strand, within QEN71_RS37635at 1812.120 kb on - strand, within QEN71_RS37635at 1812.309 kb on + strand, within QEN71_RS37635at 1812.310 kb on - strand, within QEN71_RS37635at 1812.642 kb on + strand, within QEN71_RS37635at 1812.731 kb on - strandat 1812.731 kb on - strandat 1812.731 kb on - strandat 1812.945 kb on + strandat 1812.945 kb on + strandat 1812.946 kb on - strandat 1812.946 kb on - strandat 1812.946 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,810,137 - QEN71_RS37620 0.23 -0.2
1,810,137 - QEN71_RS37620 0.23 -0.4
1,810,409 + QEN71_RS37620 0.58 -0.9
1,810,526 + QEN71_RS37620 0.74 +0.1
1,810,527 - QEN71_RS37620 0.74 -0.4
1,810,527 - QEN71_RS37620 0.74 +1.3
1,810,557 - QEN71_RS37620 0.78 +1.1
1,810,613 + QEN71_RS37620 0.85 -0.1
1,811,104 + -0.7
1,811,104 + -0.8
1,811,105 - +1.3
1,811,106 + +0.4
1,811,106 + -0.4
1,811,107 - -1.0
1,811,475 + QEN71_RS37630 0.40 +0.6
1,811,568 + QEN71_RS37630 0.50 -1.1
1,811,663 + QEN71_RS37630 0.61 +1.4
1,811,664 - QEN71_RS37630 0.61 +0.0
1,811,664 - QEN71_RS37630 0.61 -0.1
1,811,664 - QEN71_RS37630 0.61 -0.7
1,811,827 - QEN71_RS37630 0.80 +1.0
1,811,943 + -1.7
1,812,035 - -0.2
1,812,120 - QEN71_RS37635 0.16 +0.3
1,812,120 - QEN71_RS37635 0.16 -1.5
1,812,120 - QEN71_RS37635 0.16 +0.9
1,812,120 - QEN71_RS37635 0.16 +0.3
1,812,120 - QEN71_RS37635 0.16 -0.2
1,812,120 - QEN71_RS37635 0.16 +0.9
1,812,309 + QEN71_RS37635 0.41 -0.7
1,812,310 - QEN71_RS37635 0.41 +0.9
1,812,642 + QEN71_RS37635 0.85 -0.7
1,812,731 - +0.7
1,812,731 - -0.8
1,812,731 - -0.3
1,812,945 + +0.3
1,812,945 + -0.2
1,812,946 - -1.1
1,812,946 - +0.1
1,812,946 - +1.2

Or see this region's nucleotide sequence