Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35250

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35245 and QEN71_RS35250 are separated by 9 nucleotidesQEN71_RS35250 and QEN71_RS35255 overlap by 2 nucleotides QEN71_RS35245: QEN71_RS35245 - hypothetical protein, at 1,257,529 to 1,258,047 _RS35245 QEN71_RS35250: QEN71_RS35250 - hypothetical protein, at 1,258,057 to 1,258,248 _RS35250 QEN71_RS35255: QEN71_RS35255 - tetratricopeptide repeat protein, at 1,258,247 to 1,259,734 _RS35255 Position (kb) 1258 1259Strain fitness (log2 ratio) -2 -1 0 1at 1257.541 kb on - strandat 1257.556 kb on + strandat 1257.680 kb on + strand, within QEN71_RS35245at 1257.894 kb on - strand, within QEN71_RS35245at 1257.894 kb on - strand, within QEN71_RS35245at 1258.065 kb on + strandat 1258.235 kb on - strandat 1258.235 kb on - strandat 1258.265 kb on + strandat 1258.265 kb on + strandat 1258.266 kb on - strandat 1258.372 kb on - strandat 1258.537 kb on - strand, within QEN71_RS35255at 1258.543 kb on - strand, within QEN71_RS35255at 1259.005 kb on - strand, within QEN71_RS35255at 1259.149 kb on - strand, within QEN71_RS35255

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,257,541 - -0.7
1,257,556 + -0.3
1,257,680 + QEN71_RS35245 0.29 -1.8
1,257,894 - QEN71_RS35245 0.70 +0.9
1,257,894 - QEN71_RS35245 0.70 +0.5
1,258,065 + -0.6
1,258,235 - +0.4
1,258,235 - +1.6
1,258,265 + -0.8
1,258,265 + -0.1
1,258,266 - -1.6
1,258,372 - +0.5
1,258,537 - QEN71_RS35255 0.19 -0.6
1,258,543 - QEN71_RS35255 0.20 +1.1
1,259,005 - QEN71_RS35255 0.51 -0.6
1,259,149 - QEN71_RS35255 0.61 +0.1

Or see this region's nucleotide sequence