Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27700

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS27695 and QEN71_RS27700 are separated by 460 nucleotidesQEN71_RS27700 and QEN71_RS27705 are separated by 94 nucleotides QEN71_RS27695: QEN71_RS27695 - APC family permease, at 6,170,687 to 6,172,291 _RS27695 QEN71_RS27700: QEN71_RS27700 - cold-shock protein, at 6,172,752 to 6,172,955 _RS27700 QEN71_RS27705: QEN71_RS27705 - Hsp70 family protein, at 6,173,050 to 6,174,318 _RS27705 Position (kb) 6172 6173Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6171.830 kb on + strand, within QEN71_RS27695at 6171.830 kb on + strand, within QEN71_RS27695at 6171.831 kb on - strand, within QEN71_RS27695at 6171.846 kb on + strand, within QEN71_RS27695at 6171.846 kb on + strand, within QEN71_RS27695at 6171.847 kb on - strand, within QEN71_RS27695at 6171.847 kb on - strand, within QEN71_RS27695at 6171.847 kb on - strand, within QEN71_RS27695at 6171.847 kb on - strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.861 kb on + strand, within QEN71_RS27695at 6171.862 kb on - strand, within QEN71_RS27695at 6171.862 kb on - strand, within QEN71_RS27695at 6171.862 kb on - strand, within QEN71_RS27695at 6171.862 kb on - strand, within QEN71_RS27695at 6171.862 kb on - strand, within QEN71_RS27695at 6171.862 kb on - strand, within QEN71_RS27695at 6171.862 kb on - strand, within QEN71_RS27695at 6171.928 kb on + strand, within QEN71_RS27695at 6171.928 kb on + strand, within QEN71_RS27695at 6171.928 kb on + strand, within QEN71_RS27695at 6171.928 kb on + strand, within QEN71_RS27695at 6171.928 kb on + strand, within QEN71_RS27695at 6171.928 kb on + strand, within QEN71_RS27695at 6171.928 kb on + strand, within QEN71_RS27695at 6171.928 kb on + strand, within QEN71_RS27695at 6171.929 kb on - strand, within QEN71_RS27695at 6171.929 kb on - strand, within QEN71_RS27695at 6171.929 kb on - strand, within QEN71_RS27695at 6171.929 kb on - strand, within QEN71_RS27695at 6171.942 kb on + strand, within QEN71_RS27695at 6171.942 kb on + strand, within QEN71_RS27695at 6171.943 kb on - strand, within QEN71_RS27695at 6171.960 kb on + strand, within QEN71_RS27695at 6171.960 kb on + strand, within QEN71_RS27695at 6171.960 kb on + strand, within QEN71_RS27695at 6171.960 kb on + strand, within QEN71_RS27695at 6171.960 kb on + strand, within QEN71_RS27695at 6171.960 kb on + strand, within QEN71_RS27695at 6171.960 kb on + strand, within QEN71_RS27695at 6171.960 kb on + strand, within QEN71_RS27695at 6171.960 kb on + strand, within QEN71_RS27695at 6171.960 kb on + strand, within QEN71_RS27695at 6171.961 kb on - strand, within QEN71_RS27695at 6171.961 kb on - strand, within QEN71_RS27695at 6171.961 kb on - strand, within QEN71_RS27695at 6171.961 kb on - strand, within QEN71_RS27695at 6171.961 kb on - strand, within QEN71_RS27695at 6171.961 kb on - strand, within QEN71_RS27695at 6171.961 kb on - strand, within QEN71_RS27695at 6172.030 kb on + strand, within QEN71_RS27695at 6172.113 kb on + strand, within QEN71_RS27695at 6172.113 kb on + strand, within QEN71_RS27695at 6172.113 kb on + strand, within QEN71_RS27695at 6172.113 kb on + strand, within QEN71_RS27695at 6172.113 kb on + strand, within QEN71_RS27695at 6172.114 kb on - strand, within QEN71_RS27695at 6172.114 kb on - strand, within QEN71_RS27695at 6172.279 kb on + strandat 6172.279 kb on + strandat 6172.279 kb on + strandat 6172.279 kb on + strandat 6172.303 kb on + strandat 6172.303 kb on + strandat 6172.303 kb on + strandat 6172.304 kb on - strandat 6172.352 kb on + strandat 6172.353 kb on - strandat 6172.353 kb on - strandat 6172.353 kb on - strandat 6172.353 kb on - strandat 6172.362 kb on + strandat 6172.363 kb on - strandat 6172.369 kb on + strandat 6172.369 kb on + strandat 6172.443 kb on + strandat 6172.443 kb on + strandat 6172.444 kb on - strandat 6172.485 kb on + strandat 6172.486 kb on - strandat 6172.486 kb on - strandat 6172.492 kb on + strandat 6172.492 kb on + strandat 6172.493 kb on - strandat 6172.523 kb on + strandat 6172.540 kb on + strandat 6172.540 kb on + strandat 6172.540 kb on + strandat 6172.541 kb on - strandat 6172.544 kb on - strandat 6172.556 kb on + strandat 6172.556 kb on + strandat 6172.556 kb on + strandat 6172.556 kb on + strandat 6172.556 kb on + strandat 6172.556 kb on + strandat 6172.556 kb on + strandat 6172.556 kb on + strandat 6172.556 kb on + strandat 6172.557 kb on - strandat 6172.557 kb on - strandat 6172.566 kb on + strandat 6172.567 kb on - strandat 6172.567 kb on - strandat 6172.573 kb on + strandat 6172.573 kb on + strandat 6172.573 kb on + strandat 6172.601 kb on + strandat 6172.685 kb on + strandat 6172.953 kb on + strandat 6172.953 kb on + strandat 6172.959 kb on + strandat 6172.959 kb on + strandat 6172.959 kb on + strandat 6172.959 kb on + strandat 6172.959 kb on + strandat 6172.959 kb on + strandat 6172.959 kb on + strandat 6172.959 kb on + strandat 6172.960 kb on - strandat 6173.060 kb on - strandat 6173.060 kb on - strandat 6173.192 kb on + strand, within QEN71_RS27705at 6173.192 kb on + strand, within QEN71_RS27705at 6173.192 kb on + strand, within QEN71_RS27705at 6173.192 kb on + strand, within QEN71_RS27705at 6173.192 kb on + strand, within QEN71_RS27705at 6173.193 kb on - strand, within QEN71_RS27705at 6173.193 kb on - strand, within QEN71_RS27705at 6173.193 kb on - strand, within QEN71_RS27705at 6173.193 kb on - strand, within QEN71_RS27705at 6173.193 kb on - strand, within QEN71_RS27705at 6173.193 kb on - strand, within QEN71_RS27705at 6173.193 kb on - strand, within QEN71_RS27705at 6173.193 kb on - strand, within QEN71_RS27705at 6173.465 kb on + strand, within QEN71_RS27705at 6173.465 kb on + strand, within QEN71_RS27705at 6173.466 kb on - strand, within QEN71_RS27705at 6173.466 kb on - strand, within QEN71_RS27705at 6173.466 kb on - strand, within QEN71_RS27705at 6173.466 kb on - strand, within QEN71_RS27705at 6173.510 kb on + strand, within QEN71_RS27705at 6173.510 kb on + strand, within QEN71_RS27705at 6173.510 kb on + strand, within QEN71_RS27705at 6173.510 kb on + strand, within QEN71_RS27705at 6173.510 kb on + strand, within QEN71_RS27705at 6173.510 kb on - strand, within QEN71_RS27705at 6173.511 kb on - strand, within QEN71_RS27705at 6173.511 kb on - strand, within QEN71_RS27705at 6173.511 kb on - strand, within QEN71_RS27705at 6173.511 kb on - strand, within QEN71_RS27705at 6173.511 kb on - strand, within QEN71_RS27705at 6173.511 kb on - strand, within QEN71_RS27705at 6173.549 kb on + strand, within QEN71_RS27705at 6173.549 kb on + strand, within QEN71_RS27705at 6173.549 kb on + strand, within QEN71_RS27705at 6173.549 kb on + strand, within QEN71_RS27705at 6173.549 kb on + strand, within QEN71_RS27705at 6173.549 kb on + strand, within QEN71_RS27705at 6173.550 kb on - strand, within QEN71_RS27705at 6173.550 kb on - strand, within QEN71_RS27705at 6173.550 kb on - strand, within QEN71_RS27705at 6173.550 kb on - strand, within QEN71_RS27705at 6173.550 kb on - strand, within QEN71_RS27705at 6173.550 kb on - strand, within QEN71_RS27705at 6173.550 kb on - strand, within QEN71_RS27705at 6173.595 kb on - strand, within QEN71_RS27705at 6173.595 kb on - strand, within QEN71_RS27705at 6173.697 kb on + strand, within QEN71_RS27705at 6173.697 kb on + strand, within QEN71_RS27705at 6173.698 kb on - strand, within QEN71_RS27705at 6173.698 kb on - strand, within QEN71_RS27705at 6173.802 kb on - strand, within QEN71_RS27705at 6173.828 kb on + strand, within QEN71_RS27705at 6173.828 kb on + strand, within QEN71_RS27705at 6173.828 kb on + strand, within QEN71_RS27705at 6173.829 kb on - strand, within QEN71_RS27705at 6173.938 kb on + strand, within QEN71_RS27705at 6173.939 kb on - strand, within QEN71_RS27705at 6173.939 kb on - strand, within QEN71_RS27705at 6173.939 kb on - strand, within QEN71_RS27705at 6173.939 kb on - strand, within QEN71_RS27705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
6,171,830 + QEN71_RS27695 0.71 +1.4
6,171,830 + QEN71_RS27695 0.71 -0.7
6,171,831 - QEN71_RS27695 0.71 +0.4
6,171,846 + QEN71_RS27695 0.72 +0.1
6,171,846 + QEN71_RS27695 0.72 +0.3
6,171,847 - QEN71_RS27695 0.72 +0.0
6,171,847 - QEN71_RS27695 0.72 -0.6
6,171,847 - QEN71_RS27695 0.72 -2.2
6,171,847 - QEN71_RS27695 0.72 -0.6
6,171,861 + QEN71_RS27695 0.73 -0.8
6,171,861 + QEN71_RS27695 0.73 -0.9
6,171,861 + QEN71_RS27695 0.73 -0.3
6,171,861 + QEN71_RS27695 0.73 +1.0
6,171,861 + QEN71_RS27695 0.73 -0.8
6,171,861 + QEN71_RS27695 0.73 +0.2
6,171,861 + QEN71_RS27695 0.73 +0.1
6,171,861 + QEN71_RS27695 0.73 +0.6
6,171,861 + QEN71_RS27695 0.73 -2.8
6,171,861 + QEN71_RS27695 0.73 +0.7
6,171,861 + QEN71_RS27695 0.73 +0.6
6,171,861 + QEN71_RS27695 0.73 -0.1
6,171,861 + QEN71_RS27695 0.73 +1.0
6,171,861 + QEN71_RS27695 0.73 +0.3
6,171,861 + QEN71_RS27695 0.73 +1.0
6,171,861 + QEN71_RS27695 0.73 +2.3
6,171,861 + QEN71_RS27695 0.73 +0.4
6,171,862 - QEN71_RS27695 0.73 -0.6
6,171,862 - QEN71_RS27695 0.73 -1.0
6,171,862 - QEN71_RS27695 0.73 -0.6
6,171,862 - QEN71_RS27695 0.73 -0.4
6,171,862 - QEN71_RS27695 0.73 -0.8
6,171,862 - QEN71_RS27695 0.73 +0.3
6,171,862 - QEN71_RS27695 0.73 -0.0
6,171,928 + QEN71_RS27695 0.77 -0.5
6,171,928 + QEN71_RS27695 0.77 +2.3
6,171,928 + QEN71_RS27695 0.77 +0.1
6,171,928 + QEN71_RS27695 0.77 -0.2
6,171,928 + QEN71_RS27695 0.77 +1.0
6,171,928 + QEN71_RS27695 0.77 +0.3
6,171,928 + QEN71_RS27695 0.77 +0.6
6,171,928 + QEN71_RS27695 0.77 +0.1
6,171,929 - QEN71_RS27695 0.77 +0.1
6,171,929 - QEN71_RS27695 0.77 +0.6
6,171,929 - QEN71_RS27695 0.77 -0.8
6,171,929 - QEN71_RS27695 0.77 +0.5
6,171,942 + QEN71_RS27695 0.78 -0.0
6,171,942 + QEN71_RS27695 0.78 +2.6
6,171,943 - QEN71_RS27695 0.78 -0.0
6,171,960 + QEN71_RS27695 0.79 -1.2
6,171,960 + QEN71_RS27695 0.79 -0.7
6,171,960 + QEN71_RS27695 0.79 +0.3
6,171,960 + QEN71_RS27695 0.79 -0.5
6,171,960 + QEN71_RS27695 0.79 +2.5
6,171,960 + QEN71_RS27695 0.79 +0.9
6,171,960 + QEN71_RS27695 0.79 +0.8
6,171,960 + QEN71_RS27695 0.79 +1.5
6,171,960 + QEN71_RS27695 0.79 -0.5
6,171,960 + QEN71_RS27695 0.79 +0.0
6,171,961 - QEN71_RS27695 0.79 -0.2
6,171,961 - QEN71_RS27695 0.79 -0.8
6,171,961 - QEN71_RS27695 0.79 +0.8
6,171,961 - QEN71_RS27695 0.79 +0.8
6,171,961 - QEN71_RS27695 0.79 +0.3
6,171,961 - QEN71_RS27695 0.79 +0.8
6,171,961 - QEN71_RS27695 0.79 +0.2
6,172,030 + QEN71_RS27695 0.84 +0.0
6,172,113 + QEN71_RS27695 0.89 +0.4
6,172,113 + QEN71_RS27695 0.89 +1.0
6,172,113 + QEN71_RS27695 0.89 +0.2
6,172,113 + QEN71_RS27695 0.89 -0.1
6,172,113 + QEN71_RS27695 0.89 +2.0
6,172,114 - QEN71_RS27695 0.89 -1.3
6,172,114 - QEN71_RS27695 0.89 +1.0
6,172,279 + +1.2
6,172,279 + +0.4
6,172,279 + -0.5
6,172,279 + +1.4
6,172,303 + +0.8
6,172,303 + -0.7
6,172,303 + +1.1
6,172,304 - +1.0
6,172,352 + -0.1
6,172,353 - +0.2
6,172,353 - +0.6
6,172,353 - -0.0
6,172,353 - +0.8
6,172,362 + +1.4
6,172,363 - +1.6
6,172,369 + -0.0
6,172,369 + +0.6
6,172,443 + +1.3
6,172,443 + -0.6
6,172,444 - -0.0
6,172,485 + -0.6
6,172,486 - -0.2
6,172,486 - -1.2
6,172,492 + +0.9
6,172,492 + +2.0
6,172,493 - +0.2
6,172,523 + +0.4
6,172,540 + -1.5
6,172,540 + +0.8
6,172,540 + -0.0
6,172,541 - +0.7
6,172,544 - +1.2
6,172,556 + -0.1
6,172,556 + +0.3
6,172,556 + +0.1
6,172,556 + -0.5
6,172,556 + -0.6
6,172,556 + +1.6
6,172,556 + -2.0
6,172,556 + +0.6
6,172,556 + +1.1
6,172,557 - +1.0
6,172,557 - -1.5
6,172,566 + +0.9
6,172,567 - -0.7
6,172,567 - -2.5
6,172,573 + -0.7
6,172,573 + +0.5
6,172,573 + -0.3
6,172,601 + -0.0
6,172,685 + -0.3
6,172,953 + -0.8
6,172,953 + -0.1
6,172,959 + -0.6
6,172,959 + -1.0
6,172,959 + -1.7
6,172,959 + -0.0
6,172,959 + +0.5
6,172,959 + -0.8
6,172,959 + -0.2
6,172,959 + -0.3
6,172,960 - -0.7
6,173,060 - -1.2
6,173,060 - +0.6
6,173,192 + QEN71_RS27705 0.11 +1.4
6,173,192 + QEN71_RS27705 0.11 -0.1
6,173,192 + QEN71_RS27705 0.11 +0.8
6,173,192 + QEN71_RS27705 0.11 +1.4
6,173,192 + QEN71_RS27705 0.11 -0.2
6,173,193 - QEN71_RS27705 0.11 -0.3
6,173,193 - QEN71_RS27705 0.11 -0.0
6,173,193 - QEN71_RS27705 0.11 -0.4
6,173,193 - QEN71_RS27705 0.11 -0.0
6,173,193 - QEN71_RS27705 0.11 +0.0
6,173,193 - QEN71_RS27705 0.11 -0.3
6,173,193 - QEN71_RS27705 0.11 +0.8
6,173,193 - QEN71_RS27705 0.11 +0.1
6,173,465 + QEN71_RS27705 0.33 -0.0
6,173,465 + QEN71_RS27705 0.33 -0.0
6,173,466 - QEN71_RS27705 0.33 -0.2
6,173,466 - QEN71_RS27705 0.33 -0.7
6,173,466 - QEN71_RS27705 0.33 -0.0
6,173,466 - QEN71_RS27705 0.33 +0.2
6,173,510 + QEN71_RS27705 0.36 -0.5
6,173,510 + QEN71_RS27705 0.36 +0.1
6,173,510 + QEN71_RS27705 0.36 +1.6
6,173,510 + QEN71_RS27705 0.36 +0.6
6,173,510 + QEN71_RS27705 0.36 +1.5
6,173,510 - QEN71_RS27705 0.36 -1.9
6,173,511 - QEN71_RS27705 0.36 +0.3
6,173,511 - QEN71_RS27705 0.36 -0.3
6,173,511 - QEN71_RS27705 0.36 -0.7
6,173,511 - QEN71_RS27705 0.36 -0.3
6,173,511 - QEN71_RS27705 0.36 +0.7
6,173,511 - QEN71_RS27705 0.36 -1.0
6,173,549 + QEN71_RS27705 0.39 +1.1
6,173,549 + QEN71_RS27705 0.39 +0.6
6,173,549 + QEN71_RS27705 0.39 -1.5
6,173,549 + QEN71_RS27705 0.39 -1.0
6,173,549 + QEN71_RS27705 0.39 -0.0
6,173,549 + QEN71_RS27705 0.39 +0.6
6,173,550 - QEN71_RS27705 0.39 -0.6
6,173,550 - QEN71_RS27705 0.39 -0.5
6,173,550 - QEN71_RS27705 0.39 +0.0
6,173,550 - QEN71_RS27705 0.39 +0.5
6,173,550 - QEN71_RS27705 0.39 -0.6
6,173,550 - QEN71_RS27705 0.39 +0.4
6,173,550 - QEN71_RS27705 0.39 +0.4
6,173,595 - QEN71_RS27705 0.43 +0.1
6,173,595 - QEN71_RS27705 0.43 +0.2
6,173,697 + QEN71_RS27705 0.51 -0.5
6,173,697 + QEN71_RS27705 0.51 -0.2
6,173,698 - QEN71_RS27705 0.51 +0.7
6,173,698 - QEN71_RS27705 0.51 -0.2
6,173,802 - QEN71_RS27705 0.59 -0.5
6,173,828 + QEN71_RS27705 0.61 -0.5
6,173,828 + QEN71_RS27705 0.61 +0.1
6,173,828 + QEN71_RS27705 0.61 +0.2
6,173,829 - QEN71_RS27705 0.61 +0.0
6,173,938 + QEN71_RS27705 0.70 +1.0
6,173,939 - QEN71_RS27705 0.70 +0.9
6,173,939 - QEN71_RS27705 0.70 +0.4
6,173,939 - QEN71_RS27705 0.70 +1.0
6,173,939 - QEN71_RS27705 0.70 +0.0

Or see this region's nucleotide sequence