Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23110

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS23105 and QEN71_RS23110 overlap by 4 nucleotidesQEN71_RS23110 and QEN71_RS23115 are separated by 419 nucleotides QEN71_RS23105: QEN71_RS23105 - transcription termination factor NusA, at 5,137,601 to 5,139,076 _RS23105 QEN71_RS23110: QEN71_RS23110 - ribosome maturation factor RimP, at 5,139,073 to 5,139,531 _RS23110 QEN71_RS23115: QEN71_RS23115 - pseudouridine synthase, at 5,139,951 to 5,141,780 _RS23115 Position (kb) 5139 5140Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5139.332 kb on - strand, within QEN71_RS23110at 5139.332 kb on - strand, within QEN71_RS23110at 5139.332 kb on - strand, within QEN71_RS23110at 5139.332 kb on - strand, within QEN71_RS23110at 5139.355 kb on - strand, within QEN71_RS23110at 5139.371 kb on - strand, within QEN71_RS23110at 5139.371 kb on - strand, within QEN71_RS23110at 5139.371 kb on - strand, within QEN71_RS23110at 5139.371 kb on - strand, within QEN71_RS23110at 5139.371 kb on - strand, within QEN71_RS23110at 5139.436 kb on - strand, within QEN71_RS23110at 5139.436 kb on - strand, within QEN71_RS23110at 5139.438 kb on - strand, within QEN71_RS23110at 5139.438 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.486 kb on - strandat 5139.486 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.571 kb on - strandat 5139.571 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.708 kb on - strandat 5139.708 kb on - strandat 5139.708 kb on - strandat 5139.708 kb on - strandat 5139.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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5,139,332 - QEN71_RS23110 0.56 +0.6
5,139,332 - QEN71_RS23110 0.56 +0.9
5,139,332 - QEN71_RS23110 0.56 -1.9
5,139,332 - QEN71_RS23110 0.56 -0.7
5,139,355 - QEN71_RS23110 0.61 -0.1
5,139,371 - QEN71_RS23110 0.65 -0.3
5,139,371 - QEN71_RS23110 0.65 -0.1
5,139,371 - QEN71_RS23110 0.65 -0.1
5,139,371 - QEN71_RS23110 0.65 -0.9
5,139,371 - QEN71_RS23110 0.65 +0.7
5,139,436 - QEN71_RS23110 0.79 -0.1
5,139,436 - QEN71_RS23110 0.79 -1.3
5,139,438 - QEN71_RS23110 0.80 +0.0
5,139,438 - QEN71_RS23110 0.80 -1.4
5,139,442 - QEN71_RS23110 0.80 +1.9
5,139,442 - QEN71_RS23110 0.80 -0.9
5,139,442 - QEN71_RS23110 0.80 +0.9
5,139,442 - QEN71_RS23110 0.80 +0.2
5,139,442 - QEN71_RS23110 0.80 -2.1
5,139,442 - QEN71_RS23110 0.80 +0.5
5,139,442 - QEN71_RS23110 0.80 -0.4
5,139,442 - QEN71_RS23110 0.80 -1.3
5,139,442 - QEN71_RS23110 0.80 -1.1
5,139,442 - QEN71_RS23110 0.80 +0.1
5,139,486 - -2.2
5,139,486 - +0.9
5,139,542 - +0.5
5,139,542 - -0.7
5,139,542 - -0.5
5,139,542 - -2.0
5,139,542 - +0.4
5,139,542 - -1.1
5,139,542 - -0.2
5,139,542 - -2.8
5,139,542 - -0.0
5,139,542 - -0.4
5,139,542 - -0.4
5,139,542 - -0.4
5,139,542 - -0.6
5,139,542 - +0.5
5,139,542 - -1.5
5,139,542 - +0.3
5,139,571 - -0.8
5,139,571 - -0.4
5,139,633 - +0.3
5,139,633 - -0.9
5,139,633 - -0.9
5,139,633 - +0.5
5,139,633 - +0.9
5,139,633 - -0.4
5,139,633 - -0.4
5,139,678 - -1.7
5,139,678 - -0.7
5,139,678 - -0.1
5,139,678 - -1.9
5,139,678 - -0.9
5,139,678 - -0.2
5,139,678 - -1.4
5,139,708 - -1.8
5,139,708 - -1.5
5,139,708 - -0.4
5,139,708 - -0.3
5,139,739 - -0.5

Or see this region's nucleotide sequence