Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS14665

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS14660 and QEN71_RS14665 are separated by 119 nucleotidesQEN71_RS14665 and QEN71_RS14670 are separated by 128 nucleotidesQEN71_RS14670 and QEN71_RS14675 are separated by 117 nucleotides QEN71_RS14660: QEN71_RS14660 - inorganic phosphate transporter, at 3,270,105 to 3,271,694 _RS14660 QEN71_RS14665: QEN71_RS14665 - polyphosphate kinase 2, at 3,271,814 to 3,272,743 _RS14665 QEN71_RS14670: QEN71_RS14670 - VOC family protein, at 3,272,872 to 3,273,258 _RS14670 QEN71_RS14675: QEN71_RS14675 - gamma-glutamyltransferase, at 3,273,376 to 3,275,106 _RS14675 Position (kb) 3271 3272 3273Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3270.942 kb on + strand, within QEN71_RS14660at 3270.943 kb on - strand, within QEN71_RS14660at 3270.943 kb on - strand, within QEN71_RS14660at 3271.081 kb on - strand, within QEN71_RS14660at 3271.081 kb on - strand, within QEN71_RS14660at 3271.221 kb on + strand, within QEN71_RS14660at 3271.221 kb on + strand, within QEN71_RS14660at 3271.221 kb on + strand, within QEN71_RS14660at 3271.222 kb on - strand, within QEN71_RS14660at 3271.222 kb on - strand, within QEN71_RS14660at 3271.222 kb on - strand, within QEN71_RS14660at 3271.222 kb on - strand, within QEN71_RS14660at 3271.222 kb on - strand, within QEN71_RS14660at 3271.222 kb on - strand, within QEN71_RS14660at 3271.222 kb on - strand, within QEN71_RS14660at 3271.222 kb on - strand, within QEN71_RS14660at 3271.453 kb on - strand, within QEN71_RS14660at 3271.512 kb on + strand, within QEN71_RS14660at 3271.512 kb on + strand, within QEN71_RS14660at 3271.512 kb on + strand, within QEN71_RS14660at 3271.512 kb on + strand, within QEN71_RS14660at 3271.513 kb on - strand, within QEN71_RS14660at 3271.513 kb on - strand, within QEN71_RS14660at 3271.513 kb on - strand, within QEN71_RS14660at 3271.513 kb on - strand, within QEN71_RS14660at 3271.513 kb on - strand, within QEN71_RS14660at 3271.540 kb on + strandat 3271.541 kb on - strandat 3271.668 kb on + strandat 3271.669 kb on - strandat 3271.685 kb on + strandat 3271.685 kb on + strandat 3271.686 kb on - strandat 3271.819 kb on - strandat 3271.863 kb on + strandat 3271.892 kb on + strandat 3271.892 kb on + strandat 3272.049 kb on + strand, within QEN71_RS14665at 3272.049 kb on + strand, within QEN71_RS14665at 3272.049 kb on + strand, within QEN71_RS14665at 3272.050 kb on - strand, within QEN71_RS14665at 3272.050 kb on - strand, within QEN71_RS14665at 3272.119 kb on + strand, within QEN71_RS14665at 3272.169 kb on + strand, within QEN71_RS14665at 3272.170 kb on - strand, within QEN71_RS14665at 3272.242 kb on - strand, within QEN71_RS14665at 3272.292 kb on + strand, within QEN71_RS14665at 3272.292 kb on + strand, within QEN71_RS14665at 3272.346 kb on + strand, within QEN71_RS14665at 3272.358 kb on + strand, within QEN71_RS14665at 3272.358 kb on + strand, within QEN71_RS14665at 3272.359 kb on - strand, within QEN71_RS14665at 3272.359 kb on - strand, within QEN71_RS14665at 3272.568 kb on + strand, within QEN71_RS14665at 3272.624 kb on - strand, within QEN71_RS14665at 3272.783 kb on + strandat 3272.832 kb on + strandat 3272.832 kb on + strandat 3272.832 kb on + strandat 3272.833 kb on - strandat 3272.833 kb on - strandat 3272.836 kb on - strandat 3272.836 kb on - strandat 3273.007 kb on + strand, within QEN71_RS14670at 3273.177 kb on + strand, within QEN71_RS14670at 3273.348 kb on + strandat 3273.349 kb on - strandat 3273.419 kb on - strandat 3273.491 kb on + strandat 3273.491 kb on + strandat 3273.491 kb on + strandat 3273.492 kb on - strandat 3273.492 kb on - strandat 3273.492 kb on - strandat 3273.629 kb on + strand, within QEN71_RS14675at 3273.629 kb on + strand, within QEN71_RS14675at 3273.629 kb on + strand, within QEN71_RS14675at 3273.629 kb on + strand, within QEN71_RS14675at 3273.630 kb on - strand, within QEN71_RS14675

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,270,942 + QEN71_RS14660 0.53 -0.1
3,270,943 - QEN71_RS14660 0.53 -0.1
3,270,943 - QEN71_RS14660 0.53 -0.2
3,271,081 - QEN71_RS14660 0.61 -0.6
3,271,081 - QEN71_RS14660 0.61 +0.3
3,271,221 + QEN71_RS14660 0.70 -1.2
3,271,221 + QEN71_RS14660 0.70 -0.9
3,271,221 + QEN71_RS14660 0.70 +0.2
3,271,222 - QEN71_RS14660 0.70 -0.5
3,271,222 - QEN71_RS14660 0.70 -0.5
3,271,222 - QEN71_RS14660 0.70 +0.0
3,271,222 - QEN71_RS14660 0.70 -1.9
3,271,222 - QEN71_RS14660 0.70 -0.1
3,271,222 - QEN71_RS14660 0.70 -0.3
3,271,222 - QEN71_RS14660 0.70 +0.2
3,271,222 - QEN71_RS14660 0.70 +0.8
3,271,453 - QEN71_RS14660 0.85 -1.2
3,271,512 + QEN71_RS14660 0.88 +1.0
3,271,512 + QEN71_RS14660 0.88 -0.1
3,271,512 + QEN71_RS14660 0.88 -1.9
3,271,512 + QEN71_RS14660 0.88 -0.2
3,271,513 - QEN71_RS14660 0.89 +0.8
3,271,513 - QEN71_RS14660 0.89 +1.4
3,271,513 - QEN71_RS14660 0.89 -0.8
3,271,513 - QEN71_RS14660 0.89 +1.1
3,271,513 - QEN71_RS14660 0.89 -0.3
3,271,540 + -1.2
3,271,541 - -0.2
3,271,668 + +0.5
3,271,669 - -0.6
3,271,685 + -0.3
3,271,685 + -0.1
3,271,686 - -1.0
3,271,819 - -0.0
3,271,863 + -0.9
3,271,892 + -0.3
3,271,892 + -0.8
3,272,049 + QEN71_RS14665 0.25 -0.1
3,272,049 + QEN71_RS14665 0.25 +0.2
3,272,049 + QEN71_RS14665 0.25 +0.3
3,272,050 - QEN71_RS14665 0.25 -0.2
3,272,050 - QEN71_RS14665 0.25 +0.5
3,272,119 + QEN71_RS14665 0.33 +0.3
3,272,169 + QEN71_RS14665 0.38 +0.3
3,272,170 - QEN71_RS14665 0.38 -2.7
3,272,242 - QEN71_RS14665 0.46 -0.7
3,272,292 + QEN71_RS14665 0.51 +0.0
3,272,292 + QEN71_RS14665 0.51 -0.6
3,272,346 + QEN71_RS14665 0.57 +0.0
3,272,358 + QEN71_RS14665 0.58 +0.7
3,272,358 + QEN71_RS14665 0.58 -0.5
3,272,359 - QEN71_RS14665 0.59 -0.8
3,272,359 - QEN71_RS14665 0.59 +2.1
3,272,568 + QEN71_RS14665 0.81 +0.2
3,272,624 - QEN71_RS14665 0.87 -2.8
3,272,783 + -0.5
3,272,832 + -0.5
3,272,832 + -0.4
3,272,832 + -0.8
3,272,833 - +0.9
3,272,833 - -0.7
3,272,836 - -0.3
3,272,836 - -0.5
3,273,007 + QEN71_RS14670 0.35 -0.4
3,273,177 + QEN71_RS14670 0.79 +0.5
3,273,348 + -0.3
3,273,349 - -0.9
3,273,419 - +0.1
3,273,491 + -1.2
3,273,491 + -1.1
3,273,491 + -1.9
3,273,492 - -0.1
3,273,492 - +0.2
3,273,492 - -0.3
3,273,629 + QEN71_RS14675 0.15 -0.5
3,273,629 + QEN71_RS14675 0.15 -0.4
3,273,629 + QEN71_RS14675 0.15 -0.8
3,273,629 + QEN71_RS14675 0.15 -1.8
3,273,630 - QEN71_RS14675 0.15 -1.2

Or see this region's nucleotide sequence