Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS13840

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS13840 and QEN71_RS13845 are separated by 21 nucleotides QEN71_RS13840: QEN71_RS13840 - helix-turn-helix domain-containing protein, at 3,089,615 to 3,090,550 _RS13840 QEN71_RS13845: QEN71_RS13845 - ATP-grasp fold amidoligase family protein, at 3,090,572 to 3,091,582 _RS13845 Position (kb) 3089 3090 3091Strain fitness (log2 ratio) -2 -1 0 1 2at 3088.695 kb on - strandat 3088.731 kb on + strandat 3088.851 kb on - strandat 3089.038 kb on + strandat 3089.087 kb on + strandat 3089.088 kb on - strandat 3089.173 kb on - strandat 3089.214 kb on - strandat 3089.264 kb on + strandat 3089.265 kb on - strandat 3089.266 kb on + strandat 3089.368 kb on - strandat 3089.614 kb on + strandat 3089.946 kb on + strand, within QEN71_RS13840at 3090.043 kb on + strand, within QEN71_RS13840at 3090.174 kb on - strand, within QEN71_RS13840at 3090.174 kb on - strand, within QEN71_RS13840at 3090.176 kb on - strand, within QEN71_RS13840at 3090.176 kb on - strand, within QEN71_RS13840at 3090.545 kb on + strandat 3090.549 kb on - strandat 3090.873 kb on + strand, within QEN71_RS13845at 3090.906 kb on - strand, within QEN71_RS13845at 3090.906 kb on - strand, within QEN71_RS13845at 3091.026 kb on + strand, within QEN71_RS13845at 3091.199 kb on - strand, within QEN71_RS13845at 3091.199 kb on - strand, within QEN71_RS13845at 3091.256 kb on + strand, within QEN71_RS13845at 3091.256 kb on + strand, within QEN71_RS13845at 3091.327 kb on + strand, within QEN71_RS13845at 3091.328 kb on - strand, within QEN71_RS13845at 3091.436 kb on + strand, within QEN71_RS13845at 3091.437 kb on - strand, within QEN71_RS13845at 3091.440 kb on + strand, within QEN71_RS13845at 3091.440 kb on + strand, within QEN71_RS13845at 3091.440 kb on + strand, within QEN71_RS13845at 3091.440 kb on + strand, within QEN71_RS13845at 3091.440 kb on + strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.455 kb on - strand, within QEN71_RS13845at 3091.476 kb on - strand, within QEN71_RS13845

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,088,695 - -0.5
3,088,731 + -0.4
3,088,851 - -1.3
3,089,038 + -0.0
3,089,087 + +0.3
3,089,088 - +1.6
3,089,173 - +1.0
3,089,214 - +1.4
3,089,264 + -0.6
3,089,265 - -0.6
3,089,266 + -0.1
3,089,368 - -0.6
3,089,614 + +2.1
3,089,946 + QEN71_RS13840 0.35 -0.2
3,090,043 + QEN71_RS13840 0.46 +1.0
3,090,174 - QEN71_RS13840 0.60 -1.0
3,090,174 - QEN71_RS13840 0.60 +1.0
3,090,176 - QEN71_RS13840 0.60 +0.1
3,090,176 - QEN71_RS13840 0.60 -1.5
3,090,545 + +1.0
3,090,549 - -0.4
3,090,873 + QEN71_RS13845 0.30 -1.3
3,090,906 - QEN71_RS13845 0.33 +0.2
3,090,906 - QEN71_RS13845 0.33 +0.7
3,091,026 + QEN71_RS13845 0.45 -0.7
3,091,199 - QEN71_RS13845 0.62 -0.3
3,091,199 - QEN71_RS13845 0.62 +0.4
3,091,256 + QEN71_RS13845 0.68 +0.6
3,091,256 + QEN71_RS13845 0.68 -0.2
3,091,327 + QEN71_RS13845 0.75 -0.8
3,091,328 - QEN71_RS13845 0.75 -0.1
3,091,436 + QEN71_RS13845 0.85 -1.5
3,091,437 - QEN71_RS13845 0.86 -0.0
3,091,440 + QEN71_RS13845 0.86 +0.6
3,091,440 + QEN71_RS13845 0.86 -1.9
3,091,440 + QEN71_RS13845 0.86 +0.4
3,091,440 + QEN71_RS13845 0.86 +0.2
3,091,440 + QEN71_RS13845 0.86 +0.1
3,091,441 - QEN71_RS13845 0.86 -0.5
3,091,441 - QEN71_RS13845 0.86 -1.2
3,091,441 - QEN71_RS13845 0.86 +0.5
3,091,441 - QEN71_RS13845 0.86 -0.0
3,091,441 - QEN71_RS13845 0.86 -0.9
3,091,441 - QEN71_RS13845 0.86 +0.1
3,091,441 - QEN71_RS13845 0.86 -1.6
3,091,441 - QEN71_RS13845 0.86 +1.2
3,091,441 - QEN71_RS13845 0.86 -0.6
3,091,441 - QEN71_RS13845 0.86 -0.7
3,091,441 - QEN71_RS13845 0.86 +0.4
3,091,455 - QEN71_RS13845 0.87 +0.1
3,091,476 - QEN71_RS13845 0.89 +0.9

Or see this region's nucleotide sequence