Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00550

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00545 and QEN71_RS00550 are separated by 320 nucleotidesQEN71_RS00550 and QEN71_RS00555 are separated by 13 nucleotidesQEN71_RS00555 and QEN71_RS00560 are separated by 28 nucleotides QEN71_RS00545: QEN71_RS00545 - LacI family DNA-binding transcriptional regulator, at 118,005 to 119,057 _RS00545 QEN71_RS00550: QEN71_RS00550 - aldose 1-epimerase, at 119,378 to 120,361 _RS00550 QEN71_RS00555: QEN71_RS00555 - endonuclease/exonuclease/phosphatase family protein, at 120,375 to 121,172 _RS00555 QEN71_RS00560: QEN71_RS00560 - hypothetical protein, at 121,201 to 121,707 _RS00560 Position (kb) 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 118.513 kb on + strand, within QEN71_RS00545at 118.513 kb on + strand, within QEN71_RS00545at 118.513 kb on + strand, within QEN71_RS00545at 118.513 kb on + strand, within QEN71_RS00545at 118.513 kb on + strand, within QEN71_RS00545at 118.514 kb on - strand, within QEN71_RS00545at 118.615 kb on + strand, within QEN71_RS00545at 118.615 kb on + strand, within QEN71_RS00545at 118.615 kb on + strand, within QEN71_RS00545at 118.615 kb on + strand, within QEN71_RS00545at 118.616 kb on - strand, within QEN71_RS00545at 118.616 kb on - strand, within QEN71_RS00545at 118.616 kb on - strand, within QEN71_RS00545at 118.616 kb on - strand, within QEN71_RS00545at 118.616 kb on - strand, within QEN71_RS00545at 118.616 kb on - strand, within QEN71_RS00545at 118.678 kb on + strand, within QEN71_RS00545at 118.678 kb on + strand, within QEN71_RS00545at 118.678 kb on + strand, within QEN71_RS00545at 118.679 kb on - strand, within QEN71_RS00545at 118.690 kb on + strand, within QEN71_RS00545at 118.690 kb on + strand, within QEN71_RS00545at 118.690 kb on + strand, within QEN71_RS00545at 118.690 kb on + strand, within QEN71_RS00545at 118.691 kb on - strand, within QEN71_RS00545at 118.691 kb on - strand, within QEN71_RS00545at 118.691 kb on - strand, within QEN71_RS00545at 118.691 kb on - strand, within QEN71_RS00545at 118.691 kb on - strand, within QEN71_RS00545at 118.691 kb on - strand, within QEN71_RS00545at 118.696 kb on - strand, within QEN71_RS00545at 118.799 kb on - strand, within QEN71_RS00545at 118.799 kb on - strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.867 kb on + strand, within QEN71_RS00545at 118.868 kb on - strand, within QEN71_RS00545at 118.868 kb on - strand, within QEN71_RS00545at 118.868 kb on - strand, within QEN71_RS00545at 118.868 kb on - strand, within QEN71_RS00545at 118.868 kb on - strand, within QEN71_RS00545at 118.868 kb on - strand, within QEN71_RS00545at 118.868 kb on - strand, within QEN71_RS00545at 119.151 kb on + strandat 119.158 kb on - strandat 119.158 kb on - strandat 119.158 kb on - strandat 119.158 kb on - strandat 119.158 kb on - strandat 119.158 kb on - strandat 119.160 kb on + strandat 119.160 kb on + strandat 119.160 kb on + strandat 119.160 kb on + strandat 119.160 kb on + strandat 119.160 kb on + strandat 119.160 kb on + strandat 119.160 kb on + strandat 119.161 kb on - strandat 119.161 kb on - strandat 119.161 kb on - strandat 119.161 kb on - strandat 119.161 kb on - strandat 119.161 kb on - strandat 119.163 kb on + strandat 119.163 kb on + strandat 119.164 kb on - strandat 119.164 kb on - strandat 119.241 kb on + strandat 119.305 kb on + strandat 119.306 kb on - strandat 119.377 kb on + strandat 119.377 kb on + strandat 119.377 kb on + strandat 119.377 kb on + strandat 119.378 kb on - strandat 119.378 kb on - strandat 119.378 kb on - strandat 119.378 kb on - strandat 119.378 kb on - strandat 119.516 kb on + strand, within QEN71_RS00550at 119.516 kb on + strand, within QEN71_RS00550at 119.516 kb on + strand, within QEN71_RS00550at 119.516 kb on + strand, within QEN71_RS00550at 119.516 kb on + strand, within QEN71_RS00550at 119.516 kb on + strand, within QEN71_RS00550at 119.517 kb on - strand, within QEN71_RS00550at 119.519 kb on + strand, within QEN71_RS00550at 119.520 kb on - strand, within QEN71_RS00550at 119.526 kb on + strand, within QEN71_RS00550at 119.527 kb on - strand, within QEN71_RS00550at 119.527 kb on - strand, within QEN71_RS00550at 119.636 kb on + strand, within QEN71_RS00550at 119.636 kb on + strand, within QEN71_RS00550at 119.637 kb on - strand, within QEN71_RS00550at 119.650 kb on - strand, within QEN71_RS00550at 119.650 kb on - strand, within QEN71_RS00550at 119.711 kb on + strand, within QEN71_RS00550at 119.840 kb on + strand, within QEN71_RS00550at 119.858 kb on - strand, within QEN71_RS00550at 119.948 kb on + strand, within QEN71_RS00550at 119.948 kb on + strand, within QEN71_RS00550at 119.948 kb on + strand, within QEN71_RS00550at 119.948 kb on + strand, within QEN71_RS00550at 119.949 kb on - strand, within QEN71_RS00550at 119.949 kb on - strand, within QEN71_RS00550at 119.949 kb on - strand, within QEN71_RS00550at 119.949 kb on - strand, within QEN71_RS00550at 119.951 kb on + strand, within QEN71_RS00550at 120.225 kb on + strand, within QEN71_RS00550at 120.225 kb on + strand, within QEN71_RS00550at 120.225 kb on + strand, within QEN71_RS00550at 120.225 kb on + strand, within QEN71_RS00550at 120.225 kb on + strand, within QEN71_RS00550at 120.225 kb on + strand, within QEN71_RS00550at 120.225 kb on + strand, within QEN71_RS00550at 120.225 kb on + strand, within QEN71_RS00550at 120.225 kb on + strand, within QEN71_RS00550at 120.226 kb on - strand, within QEN71_RS00550at 120.226 kb on - strand, within QEN71_RS00550at 120.226 kb on - strand, within QEN71_RS00550at 120.226 kb on - strand, within QEN71_RS00550at 120.398 kb on + strandat 120.398 kb on + strandat 120.398 kb on + strandat 120.398 kb on + strandat 120.398 kb on + strandat 120.398 kb on + strandat 120.398 kb on + strandat 120.398 kb on + strandat 120.399 kb on - strandat 120.400 kb on + strandat 120.400 kb on + strandat 120.400 kb on + strandat 120.400 kb on + strandat 120.400 kb on + strandat 120.400 kb on + strandat 120.400 kb on + strandat 120.400 kb on + strandat 120.400 kb on + strandat 120.400 kb on + strandat 120.400 kb on + strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 120.401 kb on - strandat 121.021 kb on + strand, within QEN71_RS00555at 121.022 kb on - strand, within QEN71_RS00555at 121.022 kb on - strand, within QEN71_RS00555at 121.150 kb on - strandat 121.228 kb on + strandat 121.228 kb on + strandat 121.229 kb on - strandat 121.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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118,513 + QEN71_RS00545 0.48 +0.1
118,513 + QEN71_RS00545 0.48 +1.2
118,513 + QEN71_RS00545 0.48 +1.2
118,513 + QEN71_RS00545 0.48 +0.2
118,513 + QEN71_RS00545 0.48 +1.2
118,514 - QEN71_RS00545 0.48 -0.1
118,615 + QEN71_RS00545 0.58 +0.0
118,615 + QEN71_RS00545 0.58 +1.0
118,615 + QEN71_RS00545 0.58 -0.5
118,615 + QEN71_RS00545 0.58 -0.7
118,616 - QEN71_RS00545 0.58 +0.3
118,616 - QEN71_RS00545 0.58 -0.4
118,616 - QEN71_RS00545 0.58 -0.1
118,616 - QEN71_RS00545 0.58 -1.3
118,616 - QEN71_RS00545 0.58 +1.1
118,616 - QEN71_RS00545 0.58 -0.6
118,678 + QEN71_RS00545 0.64 +0.6
118,678 + QEN71_RS00545 0.64 +1.5
118,678 + QEN71_RS00545 0.64 -2.0
118,679 - QEN71_RS00545 0.64 +1.2
118,690 + QEN71_RS00545 0.65 +0.5
118,690 + QEN71_RS00545 0.65 +0.2
118,690 + QEN71_RS00545 0.65 -0.6
118,690 + QEN71_RS00545 0.65 -0.2
118,691 - QEN71_RS00545 0.65 +0.1
118,691 - QEN71_RS00545 0.65 -0.8
118,691 - QEN71_RS00545 0.65 -0.4
118,691 - QEN71_RS00545 0.65 +0.9
118,691 - QEN71_RS00545 0.65 -0.4
118,691 - QEN71_RS00545 0.65 -0.3
118,696 - QEN71_RS00545 0.66 -0.4
118,799 - QEN71_RS00545 0.75 -0.7
118,799 - QEN71_RS00545 0.75 -1.0
118,867 + QEN71_RS00545 0.82 -0.0
118,867 + QEN71_RS00545 0.82 +0.7
118,867 + QEN71_RS00545 0.82 -0.2
118,867 + QEN71_RS00545 0.82 -2.1
118,867 + QEN71_RS00545 0.82 +0.2
118,867 + QEN71_RS00545 0.82 +2.6
118,867 + QEN71_RS00545 0.82 +0.2
118,867 + QEN71_RS00545 0.82 +0.2
118,867 + QEN71_RS00545 0.82 +0.0
118,867 + QEN71_RS00545 0.82 -0.0
118,867 + QEN71_RS00545 0.82 -0.3
118,867 + QEN71_RS00545 0.82 +0.2
118,867 + QEN71_RS00545 0.82 -1.3
118,867 + QEN71_RS00545 0.82 +0.6
118,868 - QEN71_RS00545 0.82 -0.7
118,868 - QEN71_RS00545 0.82 -1.0
118,868 - QEN71_RS00545 0.82 +0.9
118,868 - QEN71_RS00545 0.82 +0.3
118,868 - QEN71_RS00545 0.82 +1.1
118,868 - QEN71_RS00545 0.82 -1.1
118,868 - QEN71_RS00545 0.82 +0.2
119,151 + +0.3
119,158 - -1.1
119,158 - +1.0
119,158 - -0.1
119,158 - +1.0
119,158 - -0.3
119,158 - -0.9
119,160 + +0.5
119,160 + -0.3
119,160 + -0.5
119,160 + -0.2
119,160 + +0.7
119,160 + +0.5
119,160 + +0.9
119,160 + -1.9
119,161 - -0.8
119,161 - +1.5
119,161 - -1.7
119,161 - -0.5
119,161 - -0.0
119,161 - +0.7
119,163 + -0.4
119,163 + -0.4
119,164 - -0.6
119,164 - +2.6
119,241 + +0.3
119,305 + -0.0
119,306 - +0.2
119,377 + +0.2
119,377 + +1.0
119,377 + +0.2
119,377 + -0.2
119,378 - -0.5
119,378 - -0.2
119,378 - -0.4
119,378 - -0.6
119,378 - +0.2
119,516 + QEN71_RS00550 0.14 +0.6
119,516 + QEN71_RS00550 0.14 -0.2
119,516 + QEN71_RS00550 0.14 -0.9
119,516 + QEN71_RS00550 0.14 +0.7
119,516 + QEN71_RS00550 0.14 +0.1
119,516 + QEN71_RS00550 0.14 -2.0
119,517 - QEN71_RS00550 0.14 +0.4
119,519 + QEN71_RS00550 0.14 -1.6
119,520 - QEN71_RS00550 0.14 -1.6
119,526 + QEN71_RS00550 0.15 -0.2
119,527 - QEN71_RS00550 0.15 -0.1
119,527 - QEN71_RS00550 0.15 -0.5
119,636 + QEN71_RS00550 0.26 -0.4
119,636 + QEN71_RS00550 0.26 -0.7
119,637 - QEN71_RS00550 0.26 +0.6
119,650 - QEN71_RS00550 0.28 -0.7
119,650 - QEN71_RS00550 0.28 +0.1
119,711 + QEN71_RS00550 0.34 -0.5
119,840 + QEN71_RS00550 0.47 -0.7
119,858 - QEN71_RS00550 0.49 -0.4
119,948 + QEN71_RS00550 0.58 +1.1
119,948 + QEN71_RS00550 0.58 -0.2
119,948 + QEN71_RS00550 0.58 +0.4
119,948 + QEN71_RS00550 0.58 -0.7
119,949 - QEN71_RS00550 0.58 +0.4
119,949 - QEN71_RS00550 0.58 -1.8
119,949 - QEN71_RS00550 0.58 -0.3
119,949 - QEN71_RS00550 0.58 -0.3
119,951 + QEN71_RS00550 0.58 -0.3
120,225 + QEN71_RS00550 0.86 +0.0
120,225 + QEN71_RS00550 0.86 +0.3
120,225 + QEN71_RS00550 0.86 +0.7
120,225 + QEN71_RS00550 0.86 +0.0
120,225 + QEN71_RS00550 0.86 -1.1
120,225 + QEN71_RS00550 0.86 +0.2
120,225 + QEN71_RS00550 0.86 -0.2
120,225 + QEN71_RS00550 0.86 +0.3
120,225 + QEN71_RS00550 0.86 -2.4
120,226 - QEN71_RS00550 0.86 -0.7
120,226 - QEN71_RS00550 0.86 +1.5
120,226 - QEN71_RS00550 0.86 -0.7
120,226 - QEN71_RS00550 0.86 -0.1
120,398 + +0.6
120,398 + -0.4
120,398 + +0.4
120,398 + +0.3
120,398 + -0.8
120,398 + +1.1
120,398 + -0.4
120,398 + +0.0
120,399 - +0.0
120,400 + +0.6
120,400 + +0.5
120,400 + +0.7
120,400 + +0.0
120,400 + -0.3
120,400 + -0.7
120,400 + +0.2
120,400 + -0.7
120,400 + -0.6
120,400 + -0.6
120,400 + -0.6
120,401 - +0.4
120,401 - -0.3
120,401 - -0.7
120,401 - -0.9
120,401 - +0.5
120,401 - -0.6
120,401 - -0.3
120,401 - -0.4
120,401 - -0.1
120,401 - -0.1
120,401 - +0.1
120,401 - -0.9
120,401 - -0.1
120,401 - -0.8
120,401 - +0.4
120,401 - +0.1
120,401 - +0.7
120,401 - +0.0
120,401 - +0.1
120,401 - -0.4
120,401 - -0.3
120,401 - +0.3
120,401 - +1.9
121,021 + QEN71_RS00555 0.81 +0.5
121,022 - QEN71_RS00555 0.81 -0.1
121,022 - QEN71_RS00555 0.81 -1.1
121,150 - -1.8
121,228 + +0.1
121,228 + +0.9
121,229 - -0.1
121,229 - -1.9

Or see this region's nucleotide sequence