Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04146

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
9,627	-				-0.3
9,642	-				-1.1
9,689	+				-0.4
9,729	+		MIT1002_04144	0.20	-0.2
9,790	+		MIT1002_04144	0.38	-0.1
9,790	+		MIT1002_04144	0.38	-0.1
9,790	+		MIT1002_04144	0.38	-0.8
9,790	+		MIT1002_04144	0.38	+0.6
9,790	+		MIT1002_04144	0.38	-0.1
9,790	+		MIT1002_04144	0.38	-0.4
9,790	+		MIT1002_04144	0.38	-0.4
9,790	+		MIT1002_04144	0.38	-2.2
9,790	+		MIT1002_04144	0.38	-0.1
9,790	+		MIT1002_04144	0.38	+1.5
9,790	+		MIT1002_04144	0.38	+0.1
9,790	+		MIT1002_04144	0.38	-1.4
9,790	+		MIT1002_04144	0.38	-0.3
9,790	+		MIT1002_04144	0.38	-0.6
9,790	+		MIT1002_04144	0.38	+0.2
9,790	+		MIT1002_04144	0.38	+0.8
9,790	+		MIT1002_04144	0.38	+1.0
9,790	+		MIT1002_04144	0.38	+0.6
9,790	+		MIT1002_04144	0.38	+0.2
9,790	+		MIT1002_04144	0.38	-1.0
9,790	+		MIT1002_04144	0.38	+0.8
9,790	+		MIT1002_04144	0.38	-1.1
9,790	+		MIT1002_04144	0.38	+0.2
9,790	+		MIT1002_04144	0.38	+0.9
9,790	+		MIT1002_04144	0.38	-0.4
9,798	-		MIT1002_04144	0.41	+0.1
9,798	-		MIT1002_04144	0.41	-0.4
9,798	-		MIT1002_04144	0.41	+0.4
9,798	-		MIT1002_04144	0.41	-0.6
9,798	-		MIT1002_04144	0.41	-1.8
9,798	-		MIT1002_04144	0.41	+0.5
9,798	-		MIT1002_04144	0.41	+0.5
9,798	-		MIT1002_04144	0.41	-1.3
9,798	-		MIT1002_04144	0.41	+0.5
9,798	-		MIT1002_04144	0.41	-0.3
9,798	-		MIT1002_04144	0.41	-0.4
9,798	-		MIT1002_04144	0.41	+1.4
9,798	-		MIT1002_04144	0.41	-0.4
9,798	-		MIT1002_04144	0.41	+0.4
9,798	-		MIT1002_04144	0.41	-0.8
9,798	-		MIT1002_04144	0.41	+0.4
9,798	-		MIT1002_04144	0.41	-0.6
9,798	-		MIT1002_04144	0.41	-0.1
9,798	-		MIT1002_04144	0.41	-2.2
9,808	-		MIT1002_04144	0.44	+0.0
9,883	-		MIT1002_04144	0.66	+0.4
9,911	-		MIT1002_04144	0.75	+0.8
9,957	+		MIT1002_04144	0.89	+0.2
9,967	+				+0.4
10,076	+				-0.1
10,084	-				-0.7
10,247	-				+2.3
10,266	-				-0.4
10,281	+				+0.5
10,308	+		MIT1002_04145	0.15	+0.0
10,376	-		MIT1002_04145	0.80	-2.0
10,385	+		MIT1002_04145	0.89	-1.7
10,388	-				+0.8
10,388	-				+0.4
10,476	+				+2.3
10,538	+				+0.0
10,538	+				-2.2
10,538	+				+0.1
10,546	-				-0.8
10,546	-				+0.3
10,546	-				+2.5
10,546	-				+0.1
10,581	+				-1.3
10,589	+				+0.8
10,605	+				-1.1
10,659	+		MIT1002_04146	0.14	-1.4
10,667	-		MIT1002_04146	0.15	-0.1
10,762	-		MIT1002_04146	0.30	-1.1
10,789	+		MIT1002_04146	0.34	-2.1
10,797	-		MIT1002_04146	0.35	+1.1
10,797	-		MIT1002_04146	0.35	-1.5
10,797	-		MIT1002_04146	0.35	+0.2
10,797	-		MIT1002_04146	0.35	+1.7
10,797	-		MIT1002_04146	0.35	+1.4
10,882	+		MIT1002_04146	0.49	-1.4
11,015	-		MIT1002_04146	0.70	+0.1
11,042	+		MIT1002_04146	0.74	-0.8
11,042	+		MIT1002_04146	0.74	-0.7
11,042	+		MIT1002_04146	0.74	-1.0
11,129	+		MIT1002_04146	0.88	+0.3
11,140	+		MIT1002_04146	0.89	-0.0
11,154	+				-0.2
11,242	-				-0.6
11,264	-		MIT1002_04147	0.13	+0.7
11,277	-		MIT1002_04147	0.17	+0.2
11,277	-		MIT1002_04147	0.17	-0.6
11,386	+		MIT1002_04147	0.47	+0.4
11,497	+		MIT1002_04147	0.77	+0.3
11,529	+		MIT1002_04147	0.86	-1.4
11,582	-				-2.5
11,676	+				+0.1
11,736	-				+0.0
11,783	-				-0.5
11,790	-				-0.5
11,813	+				+0.8
11,836	+				+0.6
11,849	-				-0.5
11,952	+		MIT1002_04148	0.10	+0.5
11,971	+		MIT1002_04148	0.11	-0.7
11,979	-		MIT1002_04148	0.11	-0.5
11,988	+		MIT1002_04148	0.12	-1.3
11,988	+		MIT1002_04148	0.12	-0.6
11,997	-		MIT1002_04148	0.12	-0.4
12,053	+		MIT1002_04148	0.14	+1.1
12,073	-		MIT1002_04148	0.15	+0.2