Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04048

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
4,545,262	+		MIT1002_04047	0.81	+1.0
4,545,317	-		MIT1002_04047	0.84	-1.3
4,545,548	+				-2.4
4,545,551	-				-0.3
4,545,587	-				-1.8
4,545,701	+				-1.7
4,545,707	-				+0.0
4,545,709	+				-0.7
4,545,717	-				+1.4
4,545,717	-				+0.2
4,545,728	-				-1.4
4,545,759	+				-0.2
4,545,764	-				-0.5
4,545,764	-				-0.0
4,545,778	-				-1.3
4,545,778	-				-0.6
4,545,909	+				-0.7
4,545,909	+				-0.9
4,545,909	+				-0.0
4,545,950	-				+1.1
4,546,224	-				+0.2
4,546,236	-				-1.2
4,546,241	-				-0.4
4,546,367	-				+0.4
4,546,367	-				+1.3
4,546,527	+		MIT1002_04048	0.15	-0.8
4,546,549	+		MIT1002_04048	0.16	-0.6
4,546,554	+		MIT1002_04048	0.16	-1.0
4,546,589	+		MIT1002_04048	0.18	+0.8
4,546,589	+		MIT1002_04048	0.18	-0.2
4,546,589	+		MIT1002_04048	0.18	+1.2
4,546,589	+		MIT1002_04048	0.18	+0.6
4,546,589	+		MIT1002_04048	0.18	-0.0
4,546,589	+		MIT1002_04048	0.18	-0.2
4,546,597	-		MIT1002_04048	0.19	-1.3
4,546,597	-		MIT1002_04048	0.19	+0.2
4,546,597	-		MIT1002_04048	0.19	+0.6
4,546,615	-		MIT1002_04048	0.20	+0.0
4,546,763	+		MIT1002_04048	0.28	+0.2
4,546,777	+		MIT1002_04048	0.28	+0.6
4,546,892	-		MIT1002_04048	0.35	-0.4
4,546,963	-		MIT1002_04048	0.38	-0.9
4,546,965	+		MIT1002_04048	0.39	-1.3
4,547,045	+		MIT1002_04048	0.43	+2.9
4,547,137	-		MIT1002_04048	0.48	-0.6
4,547,182	+		MIT1002_04048	0.50	-0.3
4,547,182	+		MIT1002_04048	0.50	-1.2
4,547,192	+		MIT1002_04048	0.51	-1.6
4,547,259	+		MIT1002_04048	0.55	-0.4
4,547,370	-		MIT1002_04048	0.61	+0.1
4,547,414	-		MIT1002_04048	0.63	+0.2
4,547,461	-		MIT1002_04048	0.66	+0.4
4,547,502	-		MIT1002_04048	0.68	+0.6
4,547,518	-		MIT1002_04048	0.69	+2.3
4,547,592	+		MIT1002_04048	0.73	+0.3
4,547,643	+		MIT1002_04048	0.75	+0.6
4,547,643	+		MIT1002_04048	0.75	-0.8
4,547,651	+		MIT1002_04048	0.76	-0.2
4,547,651	-		MIT1002_04048	0.76	-0.0
4,547,664	+		MIT1002_04048	0.77	-0.0
4,547,808	-		MIT1002_04048	0.84	+0.6
4,547,851	+		MIT1002_04048	0.87	-0.8
4,547,859	-		MIT1002_04048	0.87	-0.9
4,547,878	+		MIT1002_04048	0.88	-0.4
4,547,881	-		MIT1002_04048	0.88	-0.0
4,547,972	+				+1.0
4,547,984	+				-1.0
4,548,011	-				-0.9
4,548,043	-				-0.7
4,548,080	+				-2.5
4,548,089	-				+0.1
4,548,105	+				-1.4
4,548,264	-				-0.8
4,548,264	-				+0.8
4,548,274	-				-1.2
4,548,332	-				+0.7
4,548,357	-				+0.7
4,548,393	+				+0.6
4,548,399	-				+1.2
4,548,399	-				+1.6
4,548,474	-				-0.3
4,548,512	+		MIT1002_04049	0.11	+0.2
4,548,667	-		MIT1002_04049	0.15	+0.2
4,548,718	-		MIT1002_04049	0.16	+0.2
4,548,747	-		MIT1002_04049	0.17	-0.0
4,548,754	+		MIT1002_04049	0.17	-2.4
4,548,754	+		MIT1002_04049	0.17	-1.2
4,548,762	-		MIT1002_04049	0.17	+2.4
4,548,781	-		MIT1002_04049	0.18	-1.1
4,548,789	-		MIT1002_04049	0.18	+0.3
4,548,886	-		MIT1002_04049	0.21	-1.5
4,548,954	+		MIT1002_04049	0.22	-0.3
4,548,955	-		MIT1002_04049	0.22	-1.8
4,549,072	+		MIT1002_04049	0.25	+1.4
4,549,080	-		MIT1002_04049	0.26	+0.1