Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03839

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
4,296,176	-		MIT1002_03838	0.54	-0.4
4,296,178	+		MIT1002_03838	0.54	-3.2
4,296,193	+		MIT1002_03838	0.55	-0.4
4,296,218	+		MIT1002_03838	0.57	+0.2
4,296,243	+		MIT1002_03838	0.58	-0.3
4,296,262	+		MIT1002_03838	0.59	+0.4
4,296,289	-		MIT1002_03838	0.60	-0.1
4,296,468	-		MIT1002_03838	0.70	-1.6
4,296,492	-		MIT1002_03838	0.71	+0.2
4,296,506	-		MIT1002_03838	0.72	-0.7
4,296,506	-		MIT1002_03838	0.72	+2.4
4,296,508	+		MIT1002_03838	0.72	+1.4
4,296,561	-		MIT1002_03838	0.75	-0.9
4,296,601	-		MIT1002_03838	0.77	-0.9
4,296,601	-		MIT1002_03838	0.77	+0.9
4,296,625	-		MIT1002_03838	0.78	-0.8
4,296,625	-		MIT1002_03838	0.78	-0.2
4,296,649	+		MIT1002_03838	0.79	+0.9
4,296,717	+		MIT1002_03838	0.83	-0.1
4,296,782	+		MIT1002_03838	0.87	+0.1
4,296,790	-		MIT1002_03838	0.87	-0.3
4,296,796	+		MIT1002_03838	0.87	-0.7
4,296,919	+				-0.6
4,296,919	+				+0.1
4,296,924	+				+0.6
4,297,076	-				-0.3
4,297,078	+				-0.4
4,297,078	+				+0.1
4,297,078	+				+0.4
4,297,078	-				+0.5
4,297,078	-				+0.7
4,297,086	-				+0.1
4,297,086	-				+0.2
4,297,086	-				+0.1
4,297,093	+				-0.2
4,297,095	+				-0.6
4,297,095	+				+0.2
4,297,103	-				+0.2
4,297,105	+				-0.6
4,297,322	+		MIT1002_03839	0.10	+0.1
4,297,335	-		MIT1002_03839	0.11	+0.6
4,297,342	-		MIT1002_03839	0.12	+0.2
4,297,362	+		MIT1002_03839	0.13	-0.2
4,297,362	+		MIT1002_03839	0.13	+0.9
4,297,373	+		MIT1002_03839	0.14	+1.2
4,297,462	+		MIT1002_03839	0.20	-0.3
4,297,462	+		MIT1002_03839	0.20	-0.1
4,297,476	-		MIT1002_03839	0.21	+0.2
4,297,479	+		MIT1002_03839	0.21	-0.7
4,297,497	+		MIT1002_03839	0.22	+0.1
4,297,552	+		MIT1002_03839	0.26	-0.7
4,297,686	-		MIT1002_03839	0.35	+1.2
4,297,755	+		MIT1002_03839	0.39	-1.5
4,297,807	+		MIT1002_03839	0.43	-0.3
4,297,808	+		MIT1002_03839	0.43	-0.9
4,297,808	+		MIT1002_03839	0.43	+0.3
4,297,816	-		MIT1002_03839	0.43	-0.8
4,297,818	+		MIT1002_03839	0.44	-0.4
4,297,826	-		MIT1002_03839	0.44	+0.7
4,297,906	-		MIT1002_03839	0.50	-0.1
4,297,925	-		MIT1002_03839	0.51	-0.4
4,297,933	-		MIT1002_03839	0.51	-0.6
4,297,939	-		MIT1002_03839	0.52	+0.7
4,298,002	-		MIT1002_03839	0.56	+0.1
4,298,023	+		MIT1002_03839	0.57	-0.2
4,298,133	-		MIT1002_03839	0.65	+0.1
4,298,193	+		MIT1002_03839	0.69	+1.1
4,298,193	+		MIT1002_03839	0.69	-1.2
4,298,201	-		MIT1002_03839	0.69	+0.3
4,298,201	-		MIT1002_03839	0.69	+0.5
4,298,201	-		MIT1002_03839	0.69	-0.2
4,298,261	+		MIT1002_03839	0.73	+0.5
4,298,261	+		MIT1002_03839	0.73	-0.0
4,298,261	+		MIT1002_03839	0.73	-0.9
4,298,261	+		MIT1002_03839	0.73	-0.6
4,298,261	+		MIT1002_03839	0.73	-0.7
4,298,342	+		MIT1002_03839	0.79	+0.5
4,298,342	-		MIT1002_03839	0.79	+0.6
4,298,350	-		MIT1002_03839	0.79	-0.9
4,298,350	-		MIT1002_03839	0.79	-1.4
4,298,350	-		MIT1002_03839	0.79	-2.1
4,298,368	+		MIT1002_03839	0.81	+0.9
4,298,368	+		MIT1002_03839	0.81	+1.4
4,298,376	-		MIT1002_03839	0.81	+1.8
4,298,440	-		MIT1002_03839	0.85	+1.1
4,298,440	-		MIT1002_03839	0.85	+0.1
4,298,460	-		MIT1002_03839	0.87	-0.7
4,298,545	-				-2.4
4,298,593	-				+0.1
4,298,632	+				+1.4
4,298,642	+				-0.2
4,298,644	+				+0.5
4,298,650	-				-0.4
4,298,689	+				+0.5
4,298,689	+				+0.2
4,298,689	+				-0.1
4,298,749	-				-0.2
4,298,782	-				+0.3
4,298,784	-				-0.6
4,298,800	+				-1.4
4,298,800	+				+1.4
4,298,800	+				-0.8
4,298,808	-				-1.1
4,298,974	-				-0.3
4,299,043	+				-0.6
4,299,076	+				+0.3
4,299,084	-				-0.1
4,299,152	-		MIT1002_03840	0.10	-0.8
4,299,168	+		MIT1002_03840	0.11	-0.4
4,299,191	+		MIT1002_03840	0.12	-0.1
4,299,198	+		MIT1002_03840	0.12	+0.6
4,299,199	-		MIT1002_03840	0.12	-0.4
4,299,199	-		MIT1002_03840	0.12	+0.5
4,299,206	-		MIT1002_03840	0.12	+0.2
4,299,206	-		MIT1002_03840	0.12	-0.5
4,299,220	-		MIT1002_03840	0.13	-0.1
4,299,358	-		MIT1002_03840	0.18	+2.9
4,299,397	+		MIT1002_03840	0.20	-0.8
4,299,397	+		MIT1002_03840	0.20	-0.9
4,299,405	-		MIT1002_03840	0.20	+0.4
4,299,405	-		MIT1002_03840	0.20	+2.3
4,299,405	-		MIT1002_03840	0.20	+0.6
4,299,469	-		MIT1002_03840	0.23	-0.0
4,299,474	-		MIT1002_03840	0.23	-0.1
4,299,498	+		MIT1002_03840	0.24	+1.5
4,299,529	-		MIT1002_03840	0.25	-1.0
4,299,535	+		MIT1002_03840	0.25	+0.4
4,299,535	+		MIT1002_03840	0.25	-0.1
4,299,536	-		MIT1002_03840	0.25	+0.6
4,299,543	+		MIT1002_03840	0.26	+0.6
4,299,543	-		MIT1002_03840	0.26	-1.3
4,299,543	-		MIT1002_03840	0.26	-0.8
4,299,559	-		MIT1002_03840	0.26	+0.3
4,299,592	-		MIT1002_03840	0.28	+0.2