Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03396

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
3,800,416	+		MIT1002_03395	0.78	+1.1
3,800,424	-		MIT1002_03395	0.78	-1.2
3,800,431	-		MIT1002_03395	0.78	+0.8
3,800,481	+		MIT1002_03395	0.80	+0.2
3,800,502	+		MIT1002_03395	0.80	+1.2
3,800,596	+		MIT1002_03395	0.83	-0.4
3,800,623	-		MIT1002_03395	0.84	+0.5
3,800,682	+		MIT1002_03395	0.85	+1.5
3,800,687	+		MIT1002_03395	0.86	+0.5
3,800,690	-		MIT1002_03395	0.86	+0.6
3,800,690	-		MIT1002_03395	0.86	-0.0
3,800,690	-		MIT1002_03395	0.86	+0.2
3,800,695	-		MIT1002_03395	0.86	-1.8
3,800,843	+				+0.9
3,800,882	+				+0.8
3,800,882	-				+0.1
3,800,890	+				+1.0
3,800,903	-				+1.5
3,800,944	-				-0.3
3,800,944	-				-0.8
3,800,949	+				-1.2
3,800,957	-				-0.1
3,801,045	-				-0.1
3,801,073	+				+0.2
3,801,093	-				+6.7
3,801,128	+				-0.1
3,801,180	+				-0.6
3,801,188	-				+0.0
3,801,279	+				-1.2
3,801,279	+				-0.1
3,801,287	-				-1.0
3,801,287	-				-0.9
3,801,287	-				+1.2
3,801,287	-				+0.6
3,801,287	-				+0.8
3,801,287	-				-0.9
3,801,310	+				-0.8
3,801,401	+				+0.6
3,801,401	+				+0.1
3,801,401	+				-0.9
3,801,401	+				-1.5
3,801,409	-				-0.2
3,801,409	-				-0.6
3,801,409	-				+0.8
3,801,409	-				+1.2
3,801,409	-				-0.8
3,801,409	-				+0.4
3,801,458	+		MIT1002_03396	0.26	+0.0
3,801,458	+		MIT1002_03396	0.26	-0.5
3,801,476	-		MIT1002_03396	0.34	-0.1
3,801,476	-		MIT1002_03396	0.34	+0.6
3,801,480	+		MIT1002_03396	0.36	+0.2
3,801,545	-		MIT1002_03396	0.64	-1.1
3,801,570	-		MIT1002_03396	0.75	+0.4
3,801,593	+		MIT1002_03396	0.85	+1.0
3,801,595	+		MIT1002_03396	0.86	-1.1
3,801,603	-		MIT1002_03396	0.89	-2.0
3,801,654	+				-0.4
3,801,654	+				+0.6
3,801,654	+				+0.2
3,801,662	-				-0.9
3,801,703	+				-0.7
3,801,703	+				-0.4
3,801,704	-				-1.9
3,801,704	-				-3.0
3,801,784	+		MIT1002_03397	0.12	+0.2
3,801,789	+		MIT1002_03397	0.14	+1.6
3,801,801	+		MIT1002_03397	0.19	-0.6
3,801,801	+		MIT1002_03397	0.19	+0.7
3,801,801	+		MIT1002_03397	0.19	+0.4
3,801,801	+		MIT1002_03397	0.19	+1.0
3,801,801	+		MIT1002_03397	0.19	+0.2
3,801,801	+		MIT1002_03397	0.19	-0.1
3,801,801	+		MIT1002_03397	0.19	+0.2
3,801,801	+		MIT1002_03397	0.19	+2.6
3,801,801	+		MIT1002_03397	0.19	+0.3
3,801,808	+		MIT1002_03397	0.21	+0.2
3,801,809	-		MIT1002_03397	0.22	-1.2
3,801,809	-		MIT1002_03397	0.22	-1.1
3,801,809	-		MIT1002_03397	0.22	+0.0
3,801,809	-		MIT1002_03397	0.22	-1.3
3,801,809	-		MIT1002_03397	0.22	-0.6
3,801,809	-		MIT1002_03397	0.22	+0.8
3,801,809	-		MIT1002_03397	0.22	-1.1
3,801,810	-		MIT1002_03397	0.22	-2.7
3,801,845	+		MIT1002_03397	0.35	+0.5
3,801,845	+		MIT1002_03397	0.35	-0.3
3,801,845	+		MIT1002_03397	0.35	-0.1
3,802,126	+				-0.4
3,802,225	+				-0.0
3,802,225	+				-1.6
3,802,233	-				+0.1
3,802,235	+				+0.4
3,802,235	+				+0.7
3,802,235	+				-0.9
3,802,243	-				-0.1
3,802,243	-				+1.8
3,802,243	-				+0.0
3,802,288	+				-0.9
3,802,507	-				+0.8
3,802,550	-		MIT1002_03398	0.10	-0.6
3,802,615	-		MIT1002_03398	0.25	-2.5