Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03102

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
3,455,977	-		MIT1002_03100	0.70	+1.0
3,455,977	-		MIT1002_03100	0.70	-0.5
3,455,977	-		MIT1002_03100	0.70	-1.7
3,455,977	-		MIT1002_03100	0.70	-0.2
3,455,977	-		MIT1002_03100	0.70	+0.3
3,455,977	-		MIT1002_03100	0.70	+1.8
3,455,977	-		MIT1002_03100	0.70	-0.7
3,455,977	-		MIT1002_03100	0.70	-1.2
3,455,977	-		MIT1002_03100	0.70	-0.4
3,455,981	+		MIT1002_03100	0.71	+0.5
3,455,981	+		MIT1002_03100	0.71	+2.0
3,455,981	+		MIT1002_03100	0.71	+0.1
3,455,989	-		MIT1002_03100	0.72	+0.2
3,456,039	+		MIT1002_03100	0.81	-2.2
3,456,047	+		MIT1002_03100	0.82	-0.3
3,456,181	+				-0.4
3,456,197	+				-0.3
3,456,202	+				+0.3
3,456,292	-		MIT1002_03101	0.13	-0.0
3,456,321	-		MIT1002_03101	0.18	+0.4
3,456,337	+		MIT1002_03101	0.20	+0.1
3,456,341	+		MIT1002_03101	0.21	-1.1
3,456,438	+		MIT1002_03101	0.35	+0.2
3,456,479	-		MIT1002_03101	0.42	-0.7
3,456,516	+		MIT1002_03101	0.47	-0.7
3,456,521	+		MIT1002_03101	0.48	+0.2
3,456,576	+		MIT1002_03101	0.56	+1.7
3,456,584	-		MIT1002_03101	0.58	+0.6
3,456,648	+		MIT1002_03101	0.67	-0.8
3,456,669	-		MIT1002_03101	0.70	-0.1
3,456,713	-		MIT1002_03101	0.77	-1.0
3,456,771	+		MIT1002_03101	0.86	-0.8
3,456,786	+		MIT1002_03101	0.88	-1.0
3,456,822	+				+0.7
3,456,867	-				-0.5
3,456,867	-				+0.3
3,456,872	-				-0.2
3,456,925	+				-0.8
3,456,933	-				+0.5
3,456,954	+				-0.9
3,456,970	+				+0.7
3,457,003	+				+0.2
3,457,011	-				-1.2
3,457,011	-				+1.2
3,457,011	-				+1.3
3,457,011	-				+0.7
3,457,015	+				-1.5
3,457,057	+				+0.9
3,457,127	+		MIT1002_03102	0.17	+0.3
3,457,262	+		MIT1002_03102	0.31	+0.2
3,457,263	-		MIT1002_03102	0.32	+0.1
3,457,309	+		MIT1002_03102	0.36	-2.3
3,457,314	+		MIT1002_03102	0.37	-0.2
3,457,316	+		MIT1002_03102	0.37	-0.4
3,457,319	+		MIT1002_03102	0.38	-0.2
3,457,370	+		MIT1002_03102	0.43	+0.1
3,457,378	-		MIT1002_03102	0.44	+1.6
3,457,447	-		MIT1002_03102	0.51	+0.2
3,457,466	+		MIT1002_03102	0.53	+0.1
3,457,580	-		MIT1002_03102	0.66	+0.9
3,457,580	-		MIT1002_03102	0.66	-0.7
3,457,582	+		MIT1002_03102	0.66	+0.5
3,457,590	-		MIT1002_03102	0.67	-0.9
3,457,598	+		MIT1002_03102	0.68	-0.5
3,457,608	+		MIT1002_03102	0.69	+0.2
3,457,716	-		MIT1002_03102	0.80	-1.0
3,457,795	+		MIT1002_03102	0.89	-2.4
3,457,811	-				-0.7
3,457,813	+				+0.1
3,457,827	+				+1.8
3,457,827	+				-0.9
3,457,827	+				+0.3
3,457,835	-				-0.6
3,457,835	-				-0.4
3,457,861	+				+0.3
3,457,861	+				+2.1
3,457,867	-				+0.6
3,457,867	-				-2.1
3,457,867	-				-0.2
3,457,869	-				-0.2
3,457,939	+				+0.1
3,457,962	-				+0.0
3,458,106	+		MIT1002_03103	0.14	-0.6
3,458,141	-		MIT1002_03103	0.28	-1.7
3,458,312	+				+0.1
3,458,315	-				+0.8
3,458,320	-				+0.3
3,458,337	-				+0.3
3,458,337	-				-0.2
3,458,339	+				+0.7
3,458,339	+				-1.5
3,458,339	+				-0.6
3,458,339	+				+2.3
3,458,347	-				+0.1
3,458,347	-				-0.5
3,458,347	-				-0.0
3,458,347	-				+0.0
3,458,370	-				-0.7
3,458,377	-				+1.2
3,458,378	+				+0.9
3,458,378	+				-2.3
3,458,378	+				-1.5
3,458,410	-				+0.8
3,458,470	+				-1.1
3,458,498	-		MIT1002_03104	0.13	-0.1
3,458,632	-		MIT1002_03104	0.29	-0.4
3,458,682	+		MIT1002_03104	0.35	-1.2
3,458,682	+		MIT1002_03104	0.35	+0.0
3,458,682	+		MIT1002_03104	0.35	-0.7
3,458,690	-		MIT1002_03104	0.36	+1.9
3,458,690	-		MIT1002_03104	0.36	+1.3
3,458,690	-		MIT1002_03104	0.36	-0.8
3,458,708	+		MIT1002_03104	0.38	-0.7
3,458,716	-		MIT1002_03104	0.39	-0.3
3,458,798	+		MIT1002_03104	0.50	-0.9
3,458,806	-		MIT1002_03104	0.51	+1.0
3,458,806	-		MIT1002_03104	0.51	-2.4
3,458,808	+		MIT1002_03104	0.51	+1.1
3,458,886	-		MIT1002_03104	0.60	-0.7