Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03098

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
3,452,291	+				+1.3
3,452,291	+				-1.5
3,452,304	+				+0.4
3,452,304	+				+0.8
3,452,312	-				+0.3
3,452,314	+				+1.5
3,452,322	-				+0.6
3,452,337	+				-0.3
3,452,337	+				+0.2
3,452,345	-				-1.7
3,452,345	-				+0.5
3,452,352	+				-1.4
3,452,352	+				-1.4
3,452,352	+				+0.5
3,452,352	-				+1.1
3,452,355	-				+1.1
3,452,365	-				+1.0
3,452,424	-				+0.7
3,452,424	-				+0.4
3,452,613	-				+0.3
3,452,630	+		MIT1002_03097	0.12	+0.4
3,452,683	-		MIT1002_03097	0.20	-0.5
3,452,752	+		MIT1002_03097	0.30	-0.7
3,452,760	-		MIT1002_03097	0.31	-1.1
3,452,806	+		MIT1002_03097	0.38	-0.8
3,452,815	-		MIT1002_03097	0.40	-0.6
3,452,941	+		MIT1002_03097	0.58	+0.2
3,452,946	+		MIT1002_03097	0.59	-0.5
3,452,969	+		MIT1002_03097	0.62	-0.3
3,452,977	-		MIT1002_03097	0.63	+1.3
3,453,043	+		MIT1002_03097	0.73	-0.7
3,453,043	+		MIT1002_03097	0.73	+0.3
3,453,051	-		MIT1002_03097	0.74	+0.0
3,453,051	-		MIT1002_03097	0.74	+0.3
3,453,051	-		MIT1002_03097	0.74	-0.8
3,453,079	+		MIT1002_03097	0.78	+0.0
3,453,088	-		MIT1002_03097	0.80	+1.3
3,453,115	+		MIT1002_03097	0.84	-0.4
3,453,135	-		MIT1002_03097	0.86	-0.6
3,453,183	-				-1.1
3,453,193	-				-1.7
3,453,193	-				+0.8
3,453,200	-				-0.1
3,453,216	+				-0.6
3,453,279	+				+1.1
3,453,281	+				+0.5
3,453,284	-				-0.9
3,453,424	-		MIT1002_03098	0.14	-0.9
3,453,450	-		MIT1002_03098	0.16	-0.7
3,453,450	-		MIT1002_03098	0.16	+0.2
3,453,530	-		MIT1002_03098	0.22	+0.6
3,453,530	-		MIT1002_03098	0.22	+0.7
3,453,630	+		MIT1002_03098	0.29	+1.6
3,453,669	-		MIT1002_03098	0.32	+0.4
3,453,673	+		MIT1002_03098	0.32	-0.5
3,453,674	+		MIT1002_03098	0.32	+1.3
3,453,674	+		MIT1002_03098	0.32	-0.7
3,453,682	-		MIT1002_03098	0.33	+0.0
3,453,682	-		MIT1002_03098	0.33	+0.5
3,453,721	+		MIT1002_03098	0.36	-1.0
3,453,729	-		MIT1002_03098	0.36	-0.4
3,453,729	-		MIT1002_03098	0.36	+0.4
3,453,739	-		MIT1002_03098	0.37	-0.2
3,453,777	+		MIT1002_03098	0.40	+1.1
3,453,801	-		MIT1002_03098	0.41	-1.6
3,453,956	+		MIT1002_03098	0.52	+1.8
3,454,007	+		MIT1002_03098	0.56	-1.1
3,454,007	+		MIT1002_03098	0.56	-0.0
3,454,007	+		MIT1002_03098	0.56	-2.5
3,454,015	-		MIT1002_03098	0.57	+0.2
3,454,015	-		MIT1002_03098	0.57	+0.2
3,454,032	-		MIT1002_03098	0.58	+0.0
3,454,096	+		MIT1002_03098	0.62	-0.1
3,454,185	+		MIT1002_03098	0.69	-0.2
3,454,193	+		MIT1002_03098	0.69	-0.1
3,454,289	+		MIT1002_03098	0.76	-4.0
3,454,320	-		MIT1002_03098	0.78	+0.5
3,454,321	+		MIT1002_03098	0.78	-1.2
3,454,329	-		MIT1002_03098	0.79	+0.3
3,454,329	-		MIT1002_03098	0.79	-0.0
3,454,334	+		MIT1002_03098	0.79	+0.8
3,454,334	+		MIT1002_03098	0.79	-0.2
3,454,374	+		MIT1002_03098	0.82	-0.4
3,454,375	-		MIT1002_03098	0.82	-2.7
3,454,377	+		MIT1002_03098	0.82	+0.7
3,454,382	-		MIT1002_03098	0.83	-0.1
3,454,413	-		MIT1002_03098	0.85	-0.2
3,454,518	-				-0.6
3,454,522	+				+0.5
3,454,578	+				+0.2
3,454,586	-				-0.3
3,454,586	-				-0.7
3,454,593	-				+1.2
3,454,632	-				+0.0
3,454,766	-				+0.1
3,454,796	-				+0.5
3,454,832	-		MIT1002_03099	0.15	+0.3
3,454,832	-		MIT1002_03099	0.15	+0.5
3,454,832	-		MIT1002_03099	0.15	-0.0
3,454,876	-		MIT1002_03099	0.22	-0.8
3,454,876	-		MIT1002_03099	0.22	-0.3
3,454,876	-		MIT1002_03099	0.22	+0.3
3,454,956	-		MIT1002_03099	0.35	+0.0
3,455,041	-		MIT1002_03099	0.48	-0.3
3,455,125	+		MIT1002_03099	0.61	-1.7
3,455,152	-		MIT1002_03099	0.66	-0.2
3,455,185	+		MIT1002_03099	0.71	+2.1
3,455,218	-		MIT1002_03099	0.76	-0.3
3,455,255	+		MIT1002_03099	0.82	-1.2
3,455,255	+		MIT1002_03099	0.82	-1.7
3,455,255	+		MIT1002_03099	0.82	+1.7
3,455,255	+		MIT1002_03099	0.82	+0.2
3,455,263	-		MIT1002_03099	0.83	-1.4
3,455,311	+				-0.4
3,455,377	+				-0.8
3,455,413	+				-0.8
3,455,436	+				-0.0
3,455,512	-				-0.4
3,455,590	-				+0.2