Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03045

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
3,395,193	+		MIT1002_03043	0.89	+2.6
3,395,193	+		MIT1002_03043	0.89	-0.5
3,395,201	-				+0.6
3,395,332	+				+2.4
3,395,386	-				-1.4
3,395,402	+				+0.5
3,395,414	+				+2.6
3,395,422	-				+0.0
3,395,456	-				+0.8
3,395,535	-				+1.4
3,395,564	+				-0.5
3,395,570	-		MIT1002_03044	0.11	-0.6
3,395,600	-		MIT1002_03044	0.15	-0.1
3,395,605	+		MIT1002_03044	0.16	-2.3
3,395,605	+		MIT1002_03044	0.16	-0.0
3,395,605	+		MIT1002_03044	0.16	+0.5
3,395,605	+		MIT1002_03044	0.16	-1.6
3,395,633	-		MIT1002_03044	0.20	-0.3
3,395,635	+		MIT1002_03044	0.20	+0.9
3,395,643	-		MIT1002_03044	0.21	-1.0
3,395,645	-		MIT1002_03044	0.21	+0.5
3,395,650	+		MIT1002_03044	0.22	-0.9
3,395,653	-		MIT1002_03044	0.23	-0.0
3,395,672	+		MIT1002_03044	0.25	-1.0
3,395,680	-		MIT1002_03044	0.26	-0.5
3,395,745	+		MIT1002_03044	0.36	+0.6
3,395,750	+		MIT1002_03044	0.36	-0.2
3,395,755	+		MIT1002_03044	0.37	+2.2
3,395,770	+		MIT1002_03044	0.39	-0.4
3,395,785	+		MIT1002_03044	0.42	-0.5
3,395,793	-		MIT1002_03044	0.43	-1.7
3,395,824	+		MIT1002_03044	0.47	-1.1
3,395,934	+		MIT1002_03044	0.63	+0.3
3,395,934	+		MIT1002_03044	0.63	+1.2
3,395,935	-		MIT1002_03044	0.63	-1.0
3,395,942	-		MIT1002_03044	0.64	-0.8
3,395,956	+		MIT1002_03044	0.66	-0.6
3,395,964	-		MIT1002_03044	0.67	-1.9
3,395,994	-		MIT1002_03044	0.72	+1.0
3,396,037	-		MIT1002_03044	0.78	+1.7
3,396,048	-		MIT1002_03044	0.79	-0.4
3,396,049	+		MIT1002_03044	0.79	+0.3
3,396,049	+		MIT1002_03044	0.79	+0.6
3,396,049	+		MIT1002_03044	0.79	+0.8
3,396,049	+		MIT1002_03044	0.79	+0.6
3,396,057	-		MIT1002_03044	0.81	-0.4
3,396,138	+				-0.1
3,396,162	-				-0.1
3,396,206	+		MIT1002_03045	0.17	-0.9
3,396,214	-		MIT1002_03045	0.19	+0.8
3,396,234	+		MIT1002_03045	0.26	+1.1
3,396,242	-		MIT1002_03045	0.28	+0.4
3,396,254	-		MIT1002_03045	0.32	-1.5
3,396,261	+		MIT1002_03045	0.34	-2.1
3,396,369	-		MIT1002_03045	0.67	+1.2
3,396,436	-		MIT1002_03045	0.88	+0.4
3,396,508	+				-3.5
3,396,523	+				+1.6
3,396,540	+				-0.0
3,396,548	-				+1.0
3,396,559	-				-0.7
3,396,590	-				+0.7
3,396,617	+				+0.2
3,396,617	+				-2.0
3,396,625	-				-1.2
3,396,625	-				-0.9
3,396,682	-				-0.8
3,396,682	-				+0.6
3,396,682	-				+2.5
3,396,682	-				+1.1
3,396,682	-				-0.0
3,396,690	-				-3.0
3,396,692	+				+0.6
3,396,746	+				-1.5
3,396,754	-				+1.7
3,396,902	-		MIT1002_03046	0.14	+0.5
3,396,910	-		MIT1002_03046	0.14	-0.0
3,396,993	+		MIT1002_03046	0.18	-1.8
3,397,012	+		MIT1002_03046	0.19	+0.3
3,397,049	+		MIT1002_03046	0.21	+2.3
3,397,071	+		MIT1002_03046	0.22	+1.9
3,397,185	-		MIT1002_03046	0.27	-0.4
3,397,202	+		MIT1002_03046	0.28	+0.3
3,397,210	-		MIT1002_03046	0.28	-0.3
3,397,210	-		MIT1002_03046	0.28	+0.4
3,397,232	+		MIT1002_03046	0.29	+0.0
3,397,240	-		MIT1002_03046	0.30	+0.3
3,397,241	-		MIT1002_03046	0.30	-1.0
3,397,254	+		MIT1002_03046	0.31	+0.3
3,397,275	+		MIT1002_03046	0.32	+2.1
3,397,283	-		MIT1002_03046	0.32	+1.3
3,397,350	-		MIT1002_03046	0.35	-0.5
3,397,350	-		MIT1002_03046	0.35	-0.8
3,397,350	-		MIT1002_03046	0.35	+0.7
3,397,396	+		MIT1002_03046	0.37	-1.0
3,397,404	-		MIT1002_03046	0.38	-0.2
3,397,441	-		MIT1002_03046	0.39	+0.5
3,397,473	+		MIT1002_03046	0.41	-0.6
3,397,473	-		MIT1002_03046	0.41	-0.2