Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02918

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
3,241,730	+		MIT1002_02917	0.28	-0.5
3,241,764	+		MIT1002_02917	0.31	-0.9
3,241,764	+		MIT1002_02917	0.31	+0.5
3,241,764	+		MIT1002_02917	0.31	-1.9
3,241,764	+		MIT1002_02917	0.31	+0.8
3,241,772	-		MIT1002_02917	0.32	-0.1
3,241,802	+		MIT1002_02917	0.35	+0.3
3,241,810	-		MIT1002_02917	0.35	-0.9
3,241,841	-		MIT1002_02917	0.38	+1.2
3,241,982	-		MIT1002_02917	0.51	+1.3
3,241,982	-		MIT1002_02917	0.51	+0.2
3,241,982	-		MIT1002_02917	0.51	-0.5
3,241,982	-		MIT1002_02917	0.51	+0.3
3,242,017	-		MIT1002_02917	0.54	+0.6
3,242,036	-		MIT1002_02917	0.56	+0.1
3,242,081	-		MIT1002_02917	0.60	-0.4
3,242,083	+		MIT1002_02917	0.60	-2.2
3,242,091	-		MIT1002_02917	0.61	+1.4
3,242,162	+		MIT1002_02917	0.67	-0.9
3,242,238	-		MIT1002_02917	0.74	+0.2
3,242,279	-		MIT1002_02917	0.78	-0.3
3,242,341	+		MIT1002_02917	0.83	-0.5
3,242,341	+		MIT1002_02917	0.83	+0.5
3,242,349	-		MIT1002_02917	0.84	-0.1
3,242,364	+		MIT1002_02917	0.85	-2.3
3,242,396	+		MIT1002_02917	0.88	-1.0
3,242,435	+				-1.3
3,242,437	-				-0.4
3,242,443	-				+0.5
3,242,443	-				-2.0
3,242,512	+				-0.5
3,242,512	+				-0.5
3,242,550	+				+0.4
3,242,661	+				-0.5
3,242,661	-				+0.6
3,242,674	+				+1.9
3,242,708	-				-0.2
3,242,757	+				-1.5
3,242,852	+		MIT1002_02918	0.17	+1.3
3,242,865	-		MIT1002_02918	0.19	-0.4
3,242,904	-		MIT1002_02918	0.24	-0.2
3,242,904	-		MIT1002_02918	0.24	-0.7
3,242,964	+		MIT1002_02918	0.31	-1.3
3,242,966	-		MIT1002_02918	0.32	-1.2
3,242,977	+		MIT1002_02918	0.33	+0.9
3,242,985	-		MIT1002_02918	0.34	+0.6
3,242,990	+		MIT1002_02918	0.35	+1.4
3,242,992	-		MIT1002_02918	0.35	+1.4
3,242,995	+		MIT1002_02918	0.35	+1.5
3,243,003	-		MIT1002_02918	0.36	+0.2
3,243,051	+		MIT1002_02918	0.42	+0.7
3,243,081	+		MIT1002_02918	0.46	+1.1
3,243,089	-		MIT1002_02918	0.47	-0.2
3,243,208	+		MIT1002_02918	0.62	+0.2
3,243,216	-		MIT1002_02918	0.63	+0.7
3,243,240	+		MIT1002_02918	0.66	-0.0
3,243,240	+		MIT1002_02918	0.66	-0.0
3,243,240	+		MIT1002_02918	0.66	-1.1
3,243,240	+		MIT1002_02918	0.66	+1.0
3,243,245	+		MIT1002_02918	0.66	+1.0
3,243,248	-		MIT1002_02918	0.67	+0.0
3,243,253	-		MIT1002_02918	0.67	+1.0
3,243,257	-		MIT1002_02918	0.68	-1.2
3,243,334	+		MIT1002_02918	0.78	-0.4
3,243,335	+		MIT1002_02918	0.78	-1.1
3,243,335	+		MIT1002_02918	0.78	+0.1
3,243,343	-		MIT1002_02918	0.79	+0.5
3,243,350	-		MIT1002_02918	0.80	-0.6
3,243,350	-		MIT1002_02918	0.80	-1.7
3,243,352	+		MIT1002_02918	0.80	-0.7
3,243,360	-		MIT1002_02918	0.81	-2.7
3,243,361	+		MIT1002_02918	0.81	-0.0
3,243,678	+				+0.7
3,243,704	-				+1.0
3,243,804	-				+1.2
3,243,881	-				+0.0
3,243,884	+				-0.3
3,243,943	-		MIT1002_02919	0.11	+0.4
3,243,956	-		MIT1002_02919	0.11	-1.0
3,243,961	-		MIT1002_02919	0.12	+0.0
3,243,987	+		MIT1002_02919	0.13	-0.4
3,244,057	-		MIT1002_02919	0.17	-0.7
3,244,086	-		MIT1002_02919	0.19	+1.1
3,244,124	+		MIT1002_02919	0.21	+0.2
3,244,125	+		MIT1002_02919	0.22	+0.4
3,244,133	-		MIT1002_02919	0.22	-1.0
3,244,133	-		MIT1002_02919	0.22	-0.0
3,244,135	+		MIT1002_02919	0.22	-0.1
3,244,135	+		MIT1002_02919	0.22	-0.9
3,244,143	-		MIT1002_02919	0.23	+0.5
3,244,143	-		MIT1002_02919	0.23	-0.2
3,244,193	-		MIT1002_02919	0.26	-0.7
3,244,237	+		MIT1002_02919	0.28	+0.2
3,244,264	-		MIT1002_02919	0.30	-0.7
3,244,346	+		MIT1002_02919	0.35	-0.6
3,244,432	+		MIT1002_02919	0.40	-0.0
3,244,467	+		MIT1002_02919	0.42	+0.2
3,244,477	+		MIT1002_02919	0.42	+1.4