Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02644

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
2,938,165	+		MIT1002_02643	0.15	-0.4
2,938,176	+		MIT1002_02643	0.17	+1.2
2,938,176	+		MIT1002_02643	0.17	+1.1
2,938,176	+		MIT1002_02643	0.17	-0.1
2,938,179	+		MIT1002_02643	0.18	+1.0
2,938,179	+		MIT1002_02643	0.18	-0.1
2,938,184	-		MIT1002_02643	0.18	-0.8
2,938,184	-		MIT1002_02643	0.18	+0.5
2,938,187	-		MIT1002_02643	0.19	+0.4
2,938,199	-		MIT1002_02643	0.21	-0.8
2,938,322	+		MIT1002_02643	0.40	-0.3
2,938,336	+		MIT1002_02643	0.42	+1.5
2,938,473	+		MIT1002_02643	0.64	-0.0
2,938,480	+		MIT1002_02643	0.65	-1.0
2,938,500	-		MIT1002_02643	0.68	+0.6
2,938,509	+		MIT1002_02643	0.69	-0.6
2,938,724	+				-0.4
2,938,724	+				+0.6
2,938,782	+				-1.0
2,938,782	+				-0.7
2,938,790	-				+0.9
2,938,837	+				+0.4
2,938,946	+				+0.2
2,939,242	+				+2.2
2,939,273	-				-1.1
2,939,319	-				+0.6
2,939,352	-				-2.7
2,939,359	-				+0.7
2,939,385	+				-3.7
2,939,478	-		MIT1002_02644	0.13	+0.7
2,939,648	-		MIT1002_02644	0.19	+0.5
2,939,701	+		MIT1002_02644	0.21	-1.2
2,939,719	-		MIT1002_02644	0.22	-1.7
2,939,744	-		MIT1002_02644	0.23	-0.3
2,939,744	-		MIT1002_02644	0.23	+1.0
2,939,749	-		MIT1002_02644	0.23	+0.5
2,939,790	+		MIT1002_02644	0.25	+1.2
2,939,798	-		MIT1002_02644	0.25	-1.7
2,939,873	+		MIT1002_02644	0.28	-1.9
2,939,873	+		MIT1002_02644	0.28	-1.3
2,939,905	+		MIT1002_02644	0.29	+0.4
2,939,913	-		MIT1002_02644	0.29	-1.5
2,939,968	-		MIT1002_02644	0.32	+0.1
2,939,970	+		MIT1002_02644	0.32	+0.4
2,940,022	-		MIT1002_02644	0.34	+0.2
2,940,048	+		MIT1002_02644	0.35	+0.3
2,940,120	-		MIT1002_02644	0.37	-1.0
2,940,164	+		MIT1002_02644	0.39	+1.1
2,940,172	-		MIT1002_02644	0.39	-0.1
2,940,374	-		MIT1002_02644	0.47	+1.0
2,940,374	-		MIT1002_02644	0.47	+0.4
2,940,423	-		MIT1002_02644	0.49	+0.1
2,940,485	+		MIT1002_02644	0.51	-0.2
2,940,491	-		MIT1002_02644	0.52	+1.0
2,940,577	-		MIT1002_02644	0.55	-0.3
2,940,588	+		MIT1002_02644	0.55	+0.1
2,940,596	-		MIT1002_02644	0.56	+0.2
2,940,678	+		MIT1002_02644	0.59	-0.3
2,940,688	-		MIT1002_02644	0.59	-1.3
2,940,704	-		MIT1002_02644	0.60	-0.3
2,940,715	+		MIT1002_02644	0.60	-1.8
2,940,715	+		MIT1002_02644	0.60	+0.9
2,940,723	-		MIT1002_02644	0.61	+1.9
2,940,723	-		MIT1002_02644	0.61	+1.4
2,940,723	-		MIT1002_02644	0.61	-0.7
2,940,744	-		MIT1002_02644	0.61	-0.1
2,940,804	-		MIT1002_02644	0.64	-0.2
2,940,804	-		MIT1002_02644	0.64	+0.3
2,940,862	+		MIT1002_02644	0.66	-0.0
2,940,958	-		MIT1002_02644	0.70	+1.2
2,940,958	-		MIT1002_02644	0.70	-0.8
2,940,958	-		MIT1002_02644	0.70	-0.8
2,940,997	+		MIT1002_02644	0.71	+0.9
2,941,005	-		MIT1002_02644	0.71	+0.9
2,941,032	+		MIT1002_02644	0.73	-0.2
2,941,063	-		MIT1002_02644	0.74	-2.0
2,941,069	-		MIT1002_02644	0.74	-1.1
2,941,069	-		MIT1002_02644	0.74	+0.5
2,941,082	-		MIT1002_02644	0.74	-0.4
2,941,145	+		MIT1002_02644	0.77	+0.4
2,941,162	-		MIT1002_02644	0.78	-0.1
2,941,162	-		MIT1002_02644	0.78	+0.4
2,941,187	-		MIT1002_02644	0.78	+0.4
2,941,319	+		MIT1002_02644	0.84	+1.0
2,941,365	+		MIT1002_02644	0.85	-0.5
2,941,365	+		MIT1002_02644	0.85	-0.1
2,941,392	+		MIT1002_02644	0.86	+0.7
2,941,400	-		MIT1002_02644	0.87	+1.5
2,941,426	+		MIT1002_02644	0.88	+0.8
2,941,426	+		MIT1002_02644	0.88	+1.1
2,941,473	+		MIT1002_02644	0.90	+1.2
2,941,508	+				-0.4
2,941,508	+				+0.3
2,941,508	+				+1.5
2,941,508	+				-0.8
2,941,508	+				+0.0
2,941,508	+				-0.5
2,941,508	+				-3.0
2,941,508	+				+0.0
2,941,508	+				+0.9
2,941,516	-				+1.0
2,941,516	-				+0.8
2,941,516	-				+0.5
2,941,516	-				+1.1
2,941,516	-				-0.7
2,941,516	-				+0.2
2,941,516	-				-1.1
2,941,587	+				+0.7
2,941,587	+				-0.7
2,941,587	-				-0.6
2,941,592	+				-0.3
2,941,618	-				+0.2
2,941,637	-				+0.2
2,941,652	+				+0.3
2,941,666	-				-0.3
2,941,719	+				-0.3
2,941,744	+				-0.3
2,941,853	+		MIT1002_02645	0.12	+0.2
2,941,858	+		MIT1002_02645	0.14	-0.8
2,941,866	-		MIT1002_02645	0.18	-0.2
2,941,905	-		MIT1002_02645	0.38	-0.3
2,941,939	+		MIT1002_02645	0.56	-1.5
2,941,963	-		MIT1002_02645	0.68	+0.5
2,942,060	+				+1.4
2,942,068	+				-1.8
2,942,127	+				+0.5
2,942,127	+				+0.5
2,942,127	+				-0.4
2,942,127	+				+0.7
2,942,127	+				-2.6
2,942,135	-				+0.3
2,942,135	-				+1.7
2,942,135	-				-2.8
2,942,135	-				-1.1
2,942,135	-				-1.8
2,942,135	-				+0.2
2,942,157	-				+0.7
2,942,157	-				-0.6
2,942,300	+		MIT1002_02646	0.10	+0.5
2,942,305	+		MIT1002_02646	0.11	-3.5
2,942,307	+		MIT1002_02646	0.12	+0.1
2,942,368	+		MIT1002_02646	0.27	-1.8
2,942,419	+		MIT1002_02646	0.40	+0.5
2,942,434	+		MIT1002_02646	0.44	+0.4
2,942,434	+		MIT1002_02646	0.44	-0.7
2,942,436	-		MIT1002_02646	0.44	+1.2
2,942,437	-		MIT1002_02646	0.45	-0.5
2,942,437	-		MIT1002_02646	0.45	-0.5
2,942,484	+		MIT1002_02646	0.57	-1.0
2,942,505	+		MIT1002_02646	0.62	-0.8
2,942,518	-		MIT1002_02646	0.65	+0.2
2,942,523	-		MIT1002_02646	0.66	-0.2
2,942,524	+		MIT1002_02646	0.67	+0.7
2,942,532	-		MIT1002_02646	0.69	+0.1
2,942,656	+				+0.7
2,942,660	-				+0.2
2,942,670	+				-1.1
2,942,689	+				-1.5
2,942,689	+				-0.8
2,942,689	+				+0.3
2,942,689	+				+0.5
2,942,689	+				+0.2
2,942,689	+				-1.1
2,942,697	-				-0.2
2,942,697	-				-0.7
2,942,697	-				+0.4
2,942,697	-				-0.1
2,942,697	-				+1.1
2,942,701	+				+0.9