Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02580

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
2,881,592	+				-2.3
2,881,600	-				-0.6
2,881,600	-				-1.3
2,881,615	-				-0.4
2,881,653	-				-0.4
2,881,655	+				-0.8
2,881,655	+				-0.2
2,881,663	-				+0.9
2,881,665	-				-0.7
2,881,788	+				-0.2
2,881,893	+				-0.3
2,881,893	+				-0.6
2,881,893	+				-0.0
2,881,901	-				-0.8
2,881,903	+				-0.9
2,881,903	+				+1.9
2,881,903	+				-2.6
2,881,903	+				-1.2
2,881,903	+				-0.2
2,881,903	+				+0.2
2,881,903	+				-1.1
2,881,911	-				-0.7
2,881,911	-				+0.2
2,882,050	+				-1.6
2,882,058	-				-0.4
2,882,070	+				-0.6
2,882,078	-				-0.7
2,882,107	+				-1.8
2,882,178	+		MIT1002_02580	0.14	-0.7
2,882,178	+		MIT1002_02580	0.14	-1.0
2,882,228	+		MIT1002_02580	0.17	+0.2
2,882,235	-		MIT1002_02580	0.18	-2.6
2,882,261	-		MIT1002_02580	0.19	-1.3
2,882,266	-		MIT1002_02580	0.20	+0.0
2,882,276	-		MIT1002_02580	0.20	-1.8
2,882,412	+		MIT1002_02580	0.29	-0.6
2,882,425	+		MIT1002_02580	0.30	-0.3
2,882,433	-		MIT1002_02580	0.30	-2.6
2,882,443	+		MIT1002_02580	0.31	+0.3
2,882,530	-		MIT1002_02580	0.37	-1.0
2,882,532	+		MIT1002_02580	0.37	+0.2
2,882,552	+		MIT1002_02580	0.38	-0.4
2,882,569	+		MIT1002_02580	0.39	-0.2
2,882,571	+		MIT1002_02580	0.39	-2.2
2,882,576	+		MIT1002_02580	0.39	-1.2
2,882,576	+		MIT1002_02580	0.39	+1.2
2,882,576	+		MIT1002_02580	0.39	-1.3
2,882,576	+		MIT1002_02580	0.39	-1.8
2,882,576	+		MIT1002_02580	0.39	+1.1
2,882,576	+		MIT1002_02580	0.39	-0.2
2,882,576	+		MIT1002_02580	0.39	-0.9
2,882,576	+		MIT1002_02580	0.39	-4.0
2,882,601	-		MIT1002_02580	0.41	-0.6
2,882,614	+		MIT1002_02580	0.42	-2.5
2,882,710	+		MIT1002_02580	0.48	-1.0
2,882,806	-		MIT1002_02580	0.54	-3.8
2,882,829	+		MIT1002_02580	0.56	+0.6
2,882,845	-		MIT1002_02580	0.57	-2.3
2,882,904	-		MIT1002_02580	0.60	-0.1
2,882,910	-		MIT1002_02580	0.61	-1.1
2,883,086	+		MIT1002_02580	0.72	+2.2
2,883,096	-		MIT1002_02580	0.73	+0.2
2,883,152	-		MIT1002_02580	0.76	-1.1
2,883,181	+		MIT1002_02580	0.78	-1.7
2,883,181	+		MIT1002_02580	0.78	+2.0
2,883,189	-		MIT1002_02580	0.78	-3.7
2,883,222	+		MIT1002_02580	0.81	-0.1
2,883,282	-		MIT1002_02580	0.84	+0.2
2,883,282	-		MIT1002_02580	0.84	-3.3
2,883,329	+		MIT1002_02580	0.87	-1.6
2,883,494	-				-0.8
2,883,496	+				-2.6
2,883,496	+				-1.2
2,883,504	-				-2.3
2,883,551	+				-0.1
2,883,650	+		MIT1002_02581	0.22	-1.1
2,883,650	+		MIT1002_02581	0.22	-3.2
2,883,650	+		MIT1002_02581	0.22	-0.1
2,883,650	+		MIT1002_02581	0.22	-0.1
2,883,674	+		MIT1002_02581	0.27	+0.2
2,883,784	+		MIT1002_02581	0.48	-2.9
2,883,822	+		MIT1002_02581	0.55	-1.1
2,883,910	+		MIT1002_02581	0.72	-2.2
2,884,001	+		MIT1002_02581	0.89	-0.6
2,884,009	+				-1.9
2,884,107	-				-1.6
2,884,117	+		MIT1002_02582	0.11	+1.4
2,884,155	-		MIT1002_02582	0.18	-0.8
2,884,175	-		MIT1002_02582	0.21	+0.4
2,884,187	+		MIT1002_02582	0.24	+1.4
2,884,219	-		MIT1002_02582	0.29	+1.4
2,884,235	+		MIT1002_02582	0.32	+0.4
2,884,242	-		MIT1002_02582	0.34	+0.2
2,884,242	-		MIT1002_02582	0.34	+1.1
2,884,284	+		MIT1002_02582	0.41	-0.3
2,884,293	-		MIT1002_02582	0.43	+0.3
2,884,331	-		MIT1002_02582	0.50	-1.9
2,884,331	-		MIT1002_02582	0.50	+0.4
2,884,331	-		MIT1002_02582	0.50	+0.3
2,884,387	+		MIT1002_02582	0.60	+2.7
2,884,395	-		MIT1002_02582	0.61	+0.2
2,884,395	-		MIT1002_02582	0.61	-0.8
2,884,395	-		MIT1002_02582	0.61	+0.2
2,884,407	+		MIT1002_02582	0.63	+0.0
2,884,449	-		MIT1002_02582	0.71	+0.6
2,884,471	+		MIT1002_02582	0.75	-0.8
2,884,480	+		MIT1002_02582	0.76	-0.2
2,884,488	-		MIT1002_02582	0.78	-1.4
2,884,488	-		MIT1002_02582	0.78	-0.2
2,884,488	-		MIT1002_02582	0.78	-0.2
2,884,521	-		MIT1002_02582	0.84	+2.3