Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02567

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
2,864,630	-		MIT1002_02566	0.60	+0.3
2,864,638	+		MIT1002_02566	0.61	-0.6
2,864,736	-		MIT1002_02566	0.66	-1.0
2,864,755	+		MIT1002_02566	0.67	-1.2
2,864,831	-		MIT1002_02566	0.70	-0.1
2,864,868	-		MIT1002_02566	0.72	+0.3
2,864,894	+		MIT1002_02566	0.73	+0.7
2,864,934	+		MIT1002_02566	0.75	+0.4
2,864,944	+		MIT1002_02566	0.76	-0.1
2,864,944	+		MIT1002_02566	0.76	-1.2
2,864,952	-		MIT1002_02566	0.76	+0.4
2,864,959	-		MIT1002_02566	0.77	-0.8
2,864,969	-		MIT1002_02566	0.77	-0.8
2,865,047	-		MIT1002_02566	0.81	+0.2
2,865,059	-		MIT1002_02566	0.81	+0.3
2,865,075	+		MIT1002_02566	0.82	-0.2
2,865,075	+		MIT1002_02566	0.82	-0.1
2,865,075	+		MIT1002_02566	0.82	-0.5
2,865,083	-		MIT1002_02566	0.83	-0.1
2,865,083	-		MIT1002_02566	0.83	+2.7
2,865,210	+		MIT1002_02566	0.89	-0.8
2,865,218	-		MIT1002_02566	0.89	+1.1
2,865,239	-				-0.6
2,865,300	+				+0.4
2,865,300	+				-0.5
2,865,300	+				+0.8
2,865,322	+				+0.7
2,865,336	+				+0.7
2,865,358	+				+0.7
2,865,475	-				-0.6
2,865,532	+				-0.0
2,865,540	-				-0.5
2,865,584	+				-0.8
2,865,633	+				-0.7
2,865,641	-		MIT1002_02567	0.10	-0.1
2,865,664	-		MIT1002_02567	0.13	-0.5
2,865,675	-		MIT1002_02567	0.14	-0.4
2,865,695	+		MIT1002_02567	0.16	-1.3
2,865,715	-		MIT1002_02567	0.19	-1.6
2,865,734	-		MIT1002_02567	0.21	+1.6
2,865,781	-		MIT1002_02567	0.27	-1.4
2,865,791	-		MIT1002_02567	0.28	-0.4
2,865,791	-		MIT1002_02567	0.28	-3.3
2,865,879	+		MIT1002_02567	0.38	+0.1
2,865,879	+		MIT1002_02567	0.38	-1.0
2,865,887	-		MIT1002_02567	0.39	-1.7
2,865,887	-		MIT1002_02567	0.39	-0.3
2,865,934	-		MIT1002_02567	0.45	+10.6
2,866,020	-		MIT1002_02567	0.55	-0.7
2,866,052	+		MIT1002_02567	0.59	+1.2
2,866,052	+		MIT1002_02567	0.59	-0.1
2,866,052	+		MIT1002_02567	0.59	-0.4
2,866,055	-		MIT1002_02567	0.59	+0.4
2,866,095	-		MIT1002_02567	0.64	-0.6
2,866,143	+		MIT1002_02567	0.70	+0.6
2,866,143	+		MIT1002_02567	0.70	+0.4
2,866,146	-		MIT1002_02567	0.70	+1.5
2,866,146	-		MIT1002_02567	0.70	+0.9
2,866,146	-		MIT1002_02567	0.70	-0.5
2,866,151	-		MIT1002_02567	0.71	-0.3
2,866,169	-		MIT1002_02567	0.73	-0.2
2,866,169	-		MIT1002_02567	0.73	+1.0
2,866,212	+		MIT1002_02567	0.78	-0.7
2,866,225	-		MIT1002_02567	0.80	+0.7
2,866,317	-				+0.4
2,866,322	-				-1.4
2,866,345	-				-0.4
2,866,345	-				-0.1
2,866,345	-				-2.1
2,866,345	-				-2.1
2,866,361	+				+0.1
2,866,391	-				-0.5
2,866,415	-				+1.0
2,866,554	-				-0.4
2,866,554	-				+0.4
2,866,554	-				-2.3
2,866,575	-				-0.0
2,866,578	+				+0.4
2,866,620	-		MIT1002_02568	0.14	-2.1
2,866,844	+		MIT1002_02568	0.50	+0.9
2,867,006	+		MIT1002_02568	0.76	+0.3
2,867,024	+		MIT1002_02568	0.79	+0.2
2,867,039	+		MIT1002_02568	0.81	-1.3
2,867,039	+		MIT1002_02568	0.81	-2.1
2,867,288	+				+0.6
2,867,308	+				-0.7
2,867,358	+				-0.1