Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02566

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
2,862,413	-		MIT1002_02564	0.66	+0.1
2,862,440	-		MIT1002_02564	0.68	-1.3
2,862,457	+		MIT1002_02564	0.70	-0.7
2,862,465	-		MIT1002_02564	0.70	-1.9
2,862,465	-		MIT1002_02564	0.70	+0.5
2,862,493	-		MIT1002_02564	0.73	+0.6
2,862,626	-		MIT1002_02564	0.83	-0.1
2,862,626	-		MIT1002_02564	0.83	-0.4
2,862,698	-		MIT1002_02564	0.89	+0.3
2,862,764	+				+1.2
2,862,797	+				+0.0
2,862,818	-				+1.9
2,862,826	+				+0.0
2,862,826	+				-0.0
2,862,840	+				-1.8
2,862,847	+				+1.0
2,862,848	-				-1.1
2,862,855	-				-0.0
2,862,862	-				-0.9
2,863,064	-		MIT1002_02565	0.47	+0.9
2,863,083	+		MIT1002_02565	0.52	-1.7
2,863,091	-		MIT1002_02565	0.54	+0.4
2,863,094	+		MIT1002_02565	0.55	-0.6
2,863,140	-		MIT1002_02565	0.68	-0.2
2,863,171	-		MIT1002_02565	0.77	+2.5
2,863,239	-				-0.2
2,863,243	+				-0.6
2,863,251	-				-0.8
2,863,287	+				-0.7
2,863,288	+				+1.0
2,863,295	-				-1.4
2,863,295	-				+1.4
2,863,296	-				-1.4
2,863,296	-				-1.2
2,863,314	-				+0.2
2,863,322	+				-0.9
2,863,369	+				-0.4
2,863,500	-				+0.4
2,863,500	-				-0.1
2,863,562	+				-1.1
2,863,588	+				+0.2
2,863,596	-				-0.9
2,863,643	+		MIT1002_02566	0.12	+0.8
2,863,656	+		MIT1002_02566	0.13	+0.3
2,863,665	+		MIT1002_02566	0.13	+2.0
2,863,668	+		MIT1002_02566	0.13	-0.3
2,863,687	+		MIT1002_02566	0.14	+0.7
2,863,687	+		MIT1002_02566	0.14	+0.2
2,863,687	+		MIT1002_02566	0.14	+0.6
2,863,695	-		MIT1002_02566	0.15	-1.5
2,863,695	-		MIT1002_02566	0.15	+1.0
2,863,695	-		MIT1002_02566	0.15	+0.2
2,863,756	-		MIT1002_02566	0.18	+0.1
2,863,756	-		MIT1002_02566	0.18	-3.2
2,863,788	+		MIT1002_02566	0.19	+0.2
2,863,803	-		MIT1002_02566	0.20	-0.4
2,863,888	+		MIT1002_02566	0.24	-0.5
2,864,153	-		MIT1002_02566	0.37	+0.2
2,864,232	+		MIT1002_02566	0.41	-0.0
2,864,273	+		MIT1002_02566	0.43	+0.1
2,864,278	-		MIT1002_02566	0.43	-0.1
2,864,306	+		MIT1002_02566	0.45	-0.8
2,864,337	+		MIT1002_02566	0.46	-1.2
2,864,406	-		MIT1002_02566	0.49	-5.3
2,864,476	-		MIT1002_02566	0.53	-0.2
2,864,507	-		MIT1002_02566	0.54	-0.5
2,864,520	-		MIT1002_02566	0.55	+0.2
2,864,520	-		MIT1002_02566	0.55	-1.0
2,864,541	+		MIT1002_02566	0.56	+0.2
2,864,630	-		MIT1002_02566	0.60	+0.3
2,864,638	+		MIT1002_02566	0.61	-0.6
2,864,736	-		MIT1002_02566	0.66	-1.0
2,864,755	+		MIT1002_02566	0.67	-1.2
2,864,831	-		MIT1002_02566	0.70	-0.1
2,864,868	-		MIT1002_02566	0.72	+0.3
2,864,894	+		MIT1002_02566	0.73	+0.7
2,864,934	+		MIT1002_02566	0.75	+0.4
2,864,944	+		MIT1002_02566	0.76	-0.1
2,864,944	+		MIT1002_02566	0.76	-1.2
2,864,952	-		MIT1002_02566	0.76	+0.4
2,864,959	-		MIT1002_02566	0.77	-0.8
2,864,969	-		MIT1002_02566	0.77	-0.8
2,865,047	-		MIT1002_02566	0.81	+0.2
2,865,059	-		MIT1002_02566	0.81	+0.3
2,865,075	+		MIT1002_02566	0.82	-0.2
2,865,075	+		MIT1002_02566	0.82	-0.1
2,865,075	+		MIT1002_02566	0.82	-0.5
2,865,083	-		MIT1002_02566	0.83	-0.1
2,865,083	-		MIT1002_02566	0.83	+2.7
2,865,210	+		MIT1002_02566	0.89	-0.8
2,865,218	-		MIT1002_02566	0.89	+1.1
2,865,239	-				-0.6
2,865,300	+				+0.4
2,865,300	+				-0.5
2,865,300	+				+0.8
2,865,322	+				+0.7
2,865,336	+				+0.7
2,865,358	+				+0.7
2,865,475	-				-0.6
2,865,532	+				-0.0
2,865,540	-				-0.5
2,865,584	+				-0.8
2,865,633	+				-0.7
2,865,641	-		MIT1002_02567	0.10	-0.1
2,865,664	-		MIT1002_02567	0.13	-0.5
2,865,675	-		MIT1002_02567	0.14	-0.4
2,865,695	+		MIT1002_02567	0.16	-1.3
2,865,715	-		MIT1002_02567	0.19	-1.6
2,865,734	-		MIT1002_02567	0.21	+1.6
2,865,781	-		MIT1002_02567	0.27	-1.4
2,865,791	-		MIT1002_02567	0.28	-0.4
2,865,791	-		MIT1002_02567	0.28	-3.3
2,865,879	+		MIT1002_02567	0.38	+0.1
2,865,879	+		MIT1002_02567	0.38	-1.0
2,865,887	-		MIT1002_02567	0.39	-1.7
2,865,887	-		MIT1002_02567	0.39	-0.3
2,865,934	-		MIT1002_02567	0.45	+10.6
2,866,020	-		MIT1002_02567	0.55	-0.7
2,866,052	+		MIT1002_02567	0.59	+1.2
2,866,052	+		MIT1002_02567	0.59	-0.1
2,866,052	+		MIT1002_02567	0.59	-0.4
2,866,055	-		MIT1002_02567	0.59	+0.4
2,866,095	-		MIT1002_02567	0.64	-0.6
2,866,143	+		MIT1002_02567	0.70	+0.6
2,866,143	+		MIT1002_02567	0.70	+0.4
2,866,146	-		MIT1002_02567	0.70	+1.5
2,866,146	-		MIT1002_02567	0.70	+0.9
2,866,146	-		MIT1002_02567	0.70	-0.5
2,866,151	-		MIT1002_02567	0.71	-0.3
2,866,169	-		MIT1002_02567	0.73	-0.2
2,866,169	-		MIT1002_02567	0.73	+1.0
2,866,212	+		MIT1002_02567	0.78	-0.7
2,866,225	-		MIT1002_02567	0.80	+0.7
2,866,317	-				+0.4
2,866,322	-				-1.4
2,866,345	-				-0.4
2,866,345	-				-0.1
2,866,345	-				-2.1
2,866,345	-				-2.1
2,866,361	+				+0.1
2,866,391	-				-0.5
2,866,415	-				+1.0