Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02548

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
2,841,218	+		MIT1002_02546	0.80	-0.0
2,841,250	+		MIT1002_02546	0.85	-0.3
2,841,253	-		MIT1002_02546	0.85	-0.3
2,841,256	+		MIT1002_02546	0.86	-0.0
2,841,552	+				+1.1
2,841,576	-				+2.9
2,841,578	+				+1.6
2,841,654	+				+1.6
2,841,719	+				-0.1
2,841,746	-				-0.4
2,841,766	+				-0.8
2,841,782	+				+1.5
2,841,794	+				-0.1
2,841,794	+				-0.7
2,841,795	-				-0.5
2,841,802	-				+0.5
2,841,802	-				-0.8
2,841,802	-				-0.3
2,841,811	+		MIT1002_02547	0.11	+1.2
2,841,819	-		MIT1002_02547	0.13	-1.9
2,841,819	-		MIT1002_02547	0.13	+0.3
2,841,862	+		MIT1002_02547	0.23	-0.3
2,841,870	-		MIT1002_02547	0.25	-1.9
2,841,871	-		MIT1002_02547	0.25	+1.4
2,841,957	-		MIT1002_02547	0.46	-0.4
2,842,014	-		MIT1002_02547	0.60	-0.3
2,842,014	-		MIT1002_02547	0.60	-0.6
2,842,016	+		MIT1002_02547	0.60	-0.0
2,842,018	+		MIT1002_02547	0.60	-2.3
2,842,082	+		MIT1002_02547	0.76	+0.9
2,842,084	+		MIT1002_02547	0.76	+0.7
2,842,095	+		MIT1002_02547	0.79	+0.1
2,842,095	+		MIT1002_02547	0.79	+0.1
2,842,095	+		MIT1002_02547	0.79	-1.0
2,842,095	+		MIT1002_02547	0.79	-1.7
2,842,096	+		MIT1002_02547	0.79	-1.0
2,842,103	-		MIT1002_02547	0.81	+0.6
2,842,103	-		MIT1002_02547	0.81	+0.7
2,842,133	+		MIT1002_02547	0.88	+1.4
2,842,133	+		MIT1002_02547	0.88	-0.8
2,842,133	+		MIT1002_02547	0.88	+1.7
2,842,133	+		MIT1002_02547	0.88	-0.5
2,842,141	-		MIT1002_02547	0.90	-0.0
2,842,164	+				+0.1
2,842,235	+				+0.4
2,842,264	-		MIT1002_02548	0.14	-0.6
2,842,355	-		MIT1002_02548	0.41	+0.3
2,842,365	-		MIT1002_02548	0.44	+0.4
2,842,447	+		MIT1002_02548	0.68	+1.6
2,842,455	-		MIT1002_02548	0.70	+0.2
2,842,455	-		MIT1002_02548	0.70	+1.9
2,842,455	-		MIT1002_02548	0.70	-0.6
2,842,455	-		MIT1002_02548	0.70	-0.0
2,842,455	-		MIT1002_02548	0.70	+0.9
2,842,536	-				-0.2
2,842,536	-				+0.1
2,842,642	+				+1.1
2,842,655	-		MIT1002_02549	0.12	-0.3
2,842,657	+		MIT1002_02549	0.12	+0.7
2,842,713	-		MIT1002_02549	0.25	+1.2
2,842,732	+		MIT1002_02549	0.29	+1.0
2,842,740	-		MIT1002_02549	0.31	-0.3
2,842,740	-		MIT1002_02549	0.31	-0.1
2,842,740	-		MIT1002_02549	0.31	-0.9
2,842,753	+		MIT1002_02549	0.34	-0.3
2,842,949	-		MIT1002_02549	0.79	-0.7
2,843,144	+				+0.2
2,843,188	+				+1.2
2,843,238	+				-0.1
2,843,351	+				-0.8
2,843,359	-				-1.5