Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02332

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
2,598,281	-				-1.4
2,598,349	+				+0.1
2,598,359	+				-1.2
2,598,425	+		MIT1002_02331	0.18	-0.8
2,598,433	-		MIT1002_02331	0.19	-0.4
2,598,433	-		MIT1002_02331	0.19	+0.6
2,598,433	-		MIT1002_02331	0.19	+1.7
2,598,440	-		MIT1002_02331	0.20	+0.2
2,598,445	+		MIT1002_02331	0.21	+0.5
2,598,455	+		MIT1002_02331	0.22	-1.1
2,598,455	+		MIT1002_02331	0.22	-3.9
2,598,455	+		MIT1002_02331	0.22	+0.9
2,598,455	+		MIT1002_02331	0.22	-1.3
2,598,455	+		MIT1002_02331	0.22	+1.8
2,598,455	+		MIT1002_02331	0.22	-0.1
2,598,455	+		MIT1002_02331	0.22	-0.9
2,598,455	+		MIT1002_02331	0.22	-0.1
2,598,455	+		MIT1002_02331	0.22	+1.5
2,598,455	+		MIT1002_02331	0.22	+0.6
2,598,455	+		MIT1002_02331	0.22	+0.3
2,598,455	+		MIT1002_02331	0.22	-1.0
2,598,463	-		MIT1002_02331	0.23	-0.4
2,598,463	-		MIT1002_02331	0.23	-0.1
2,598,463	-		MIT1002_02331	0.23	-0.4
2,598,463	-		MIT1002_02331	0.23	+0.5
2,598,463	-		MIT1002_02331	0.23	-0.6
2,598,463	-		MIT1002_02331	0.23	-0.1
2,598,463	-		MIT1002_02331	0.23	-0.9
2,598,463	-		MIT1002_02331	0.23	+0.9
2,598,463	-		MIT1002_02331	0.23	-0.4
2,598,463	-		MIT1002_02331	0.23	+1.1
2,598,463	-		MIT1002_02331	0.23	+1.6
2,598,463	-		MIT1002_02331	0.23	+0.6
2,598,463	-		MIT1002_02331	0.23	-0.4
2,598,481	+		MIT1002_02331	0.26	-0.1
2,598,481	+		MIT1002_02331	0.26	+0.6
2,598,639	-		MIT1002_02331	0.46	-0.0
2,598,655	-		MIT1002_02331	0.48	+0.3
2,598,666	-		MIT1002_02331	0.50	-1.1
2,598,698	+		MIT1002_02331	0.54	+0.2
2,598,738	+		MIT1002_02331	0.59	-0.9
2,598,861	-		MIT1002_02331	0.75	+0.8
2,598,882	-		MIT1002_02331	0.78	+0.8
2,598,882	-		MIT1002_02331	0.78	-0.7
2,598,910	+		MIT1002_02331	0.81	-0.7
2,599,017	+				-0.3
2,599,017	+				-0.4
2,599,017	+				+0.1
2,599,017	+				+0.3
2,599,024	+				+0.8
2,599,024	+				-0.2
2,599,025	-				+1.1
2,599,025	-				-0.9
2,599,097	-				+0.6
2,599,191	+				+0.3
2,599,313	+		MIT1002_02332	0.15	-1.4
2,599,331	-		MIT1002_02332	0.17	-0.2
2,599,371	-		MIT1002_02332	0.20	+0.2
2,599,409	+		MIT1002_02332	0.24	+0.3
2,599,410	+		MIT1002_02332	0.24	-0.6
2,599,413	-		MIT1002_02332	0.24	-0.9
2,599,413	-		MIT1002_02332	0.24	+0.6
2,599,418	-		MIT1002_02332	0.24	-0.5
2,599,427	+		MIT1002_02332	0.25	-0.1
2,599,427	+		MIT1002_02332	0.25	+0.3
2,599,450	-		MIT1002_02332	0.27	+0.4
2,599,486	-		MIT1002_02332	0.30	-0.9
2,599,584	-		MIT1002_02332	0.39	-0.3
2,599,676	+		MIT1002_02332	0.47	-1.5
2,599,676	+		MIT1002_02332	0.47	+0.2
2,599,676	+		MIT1002_02332	0.47	-1.5
2,599,709	+		MIT1002_02332	0.50	-0.1
2,599,717	-		MIT1002_02332	0.51	-1.6
2,599,727	-		MIT1002_02332	0.52	-1.2
2,599,729	+		MIT1002_02332	0.52	-0.7
2,599,775	+		MIT1002_02332	0.56	-0.2
2,599,783	-		MIT1002_02332	0.57	+1.0
2,599,797	+		MIT1002_02332	0.58	-0.4
2,599,811	+		MIT1002_02332	0.60	+1.0
2,599,819	-		MIT1002_02332	0.60	+2.0
2,599,851	+		MIT1002_02332	0.63	-2.1
2,599,895	-		MIT1002_02332	0.67	-0.5
2,599,895	-		MIT1002_02332	0.67	+2.1
2,599,921	-		MIT1002_02332	0.69	-2.5
2,599,959	-		MIT1002_02332	0.73	+1.4
2,599,959	-		MIT1002_02332	0.73	-1.0
2,599,992	+		MIT1002_02332	0.76	-0.4
2,600,007	-		MIT1002_02332	0.77	-0.1
2,600,023	+		MIT1002_02332	0.78	+0.5
2,600,031	-		MIT1002_02332	0.79	-1.0
2,600,031	-		MIT1002_02332	0.79	+0.1
2,600,065	-		MIT1002_02332	0.82	-0.1
2,600,065	-		MIT1002_02332	0.82	-0.3
2,600,210	+				-0.8
2,600,210	+				-1.4
2,600,218	-				-0.4
2,600,225	-				+2.1
2,600,225	-				-0.1
2,600,225	-				-0.6
2,600,227	+				+0.3
2,600,228	-				-0.3
2,600,318	-				+0.5
2,600,347	+				+1.8
2,600,348	-				-0.4
2,600,355	-				-1.6
2,600,396	+				+0.2
2,600,407	-				-1.0
2,600,423	+				+1.9
2,600,431	-				-1.3
2,600,449	-				+0.1
2,600,487	+				-0.7
2,600,495	-				+0.2
2,600,502	-				+1.7
2,600,513	-				+0.5
2,600,529	+		MIT1002_02333	0.13	-1.1
2,600,537	-		MIT1002_02333	0.15	+0.2
2,600,539	-		MIT1002_02333	0.15	+1.3
2,600,557	+		MIT1002_02333	0.20	-0.8
2,600,565	+		MIT1002_02333	0.22	-0.2
2,600,722	+		MIT1002_02333	0.60	-0.7
2,600,722	+		MIT1002_02333	0.60	-0.3
2,600,722	+		MIT1002_02333	0.60	-0.2
2,600,722	+		MIT1002_02333	0.60	+1.0
2,600,722	+		MIT1002_02333	0.60	+0.0
2,600,722	+		MIT1002_02333	0.60	-2.7
2,600,730	-		MIT1002_02333	0.62	-0.6
2,600,730	-		MIT1002_02333	0.62	+0.9
2,600,730	-		MIT1002_02333	0.62	-1.2
2,600,730	-		MIT1002_02333	0.62	+0.3
2,600,730	-		MIT1002_02333	0.62	-0.9
2,600,730	-		MIT1002_02333	0.62	+0.6
2,600,730	-		MIT1002_02333	0.62	-0.2
2,600,730	-		MIT1002_02333	0.62	+0.8
2,600,730	-		MIT1002_02333	0.62	-0.0
2,600,730	-		MIT1002_02333	0.62	+1.7
2,600,762	-		MIT1002_02333	0.70	+1.8
2,600,808	-		MIT1002_02333	0.81	-0.2
2,600,908	+				+0.0
2,600,937	-				+0.0
2,600,951	-				+1.0
2,600,951	-				+0.1
2,600,989	+				+0.4
2,600,989	+				-0.2
2,601,097	-				+1.1
2,601,102	-				+0.4
2,601,226	+				+0.7
2,601,226	+				+0.1
2,601,226	+				+0.1