Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02317

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
2,583,199	+		MIT1002_02316	0.11	-1.6
2,583,324	-		MIT1002_02316	0.23	+0.4
2,583,346	-		MIT1002_02316	0.25	-1.0
2,583,524	-		MIT1002_02316	0.42	-0.3
2,583,608	+		MIT1002_02316	0.50	+0.0
2,583,611	+		MIT1002_02316	0.50	-0.6
2,583,613	+		MIT1002_02316	0.50	-0.2
2,583,619	-		MIT1002_02316	0.51	+0.5
2,583,673	+		MIT1002_02316	0.56	+0.5
2,583,681	-		MIT1002_02316	0.57	-0.5
2,583,681	-		MIT1002_02316	0.57	+0.4
2,583,701	+		MIT1002_02316	0.58	-0.5
2,583,709	-		MIT1002_02316	0.59	-0.5
2,583,767	+		MIT1002_02316	0.65	-1.1
2,583,767	+		MIT1002_02316	0.65	+0.6
2,583,775	-		MIT1002_02316	0.65	-0.6
2,583,775	-		MIT1002_02316	0.65	+0.0
2,583,809	-		MIT1002_02316	0.69	+0.3
2,583,809	-		MIT1002_02316	0.69	-0.3
2,583,882	+		MIT1002_02316	0.76	-0.8
2,583,949	+		MIT1002_02316	0.82	-1.0
2,583,949	+		MIT1002_02316	0.82	+0.0
2,584,110	+				-0.8
2,584,111	+				-0.5
2,584,227	-				-0.7
2,584,239	+				-0.7
2,584,244	+				+1.4
2,584,244	+				+0.4
2,584,249	+				+0.9
2,584,289	+				-0.9
2,584,290	-				+0.5
2,584,352	+		MIT1002_02317	0.13	+0.3
2,584,368	-		MIT1002_02317	0.14	-0.8
2,584,378	+		MIT1002_02317	0.15	+0.0
2,584,546	-		MIT1002_02317	0.29	-0.0
2,584,591	+		MIT1002_02317	0.32	-1.8
2,584,591	+		MIT1002_02317	0.32	-0.1
2,584,591	+		MIT1002_02317	0.32	-0.3
2,584,599	-		MIT1002_02317	0.33	+0.9
2,584,599	-		MIT1002_02317	0.33	-0.5
2,584,627	+		MIT1002_02317	0.35	+0.3
2,584,628	+		MIT1002_02317	0.35	-0.6
2,584,633	+		MIT1002_02317	0.36	+1.5
2,584,651	-		MIT1002_02317	0.37	-0.6
2,584,761	+		MIT1002_02317	0.46	-1.4
2,584,769	-		MIT1002_02317	0.47	-0.3
2,584,785	+		MIT1002_02317	0.48	-0.5
2,584,793	-		MIT1002_02317	0.49	+0.1
2,584,793	-		MIT1002_02317	0.49	+0.7
2,584,888	+		MIT1002_02317	0.56	+0.2
2,584,907	-		MIT1002_02317	0.58	+1.3
2,585,014	-		MIT1002_02317	0.67	+0.1
2,585,043	-		MIT1002_02317	0.69	+1.4
2,585,122	+		MIT1002_02317	0.75	+0.4
2,585,169	-		MIT1002_02317	0.79	-0.6
2,585,180	+		MIT1002_02317	0.80	+0.2
2,585,188	-		MIT1002_02317	0.81	-0.5
2,585,188	-		MIT1002_02317	0.81	+0.1
2,585,188	-		MIT1002_02317	0.81	+0.1
2,585,188	-		MIT1002_02317	0.81	-0.8
2,585,188	-		MIT1002_02317	0.81	+0.5
2,585,188	-		MIT1002_02317	0.81	-0.5
2,585,188	-		MIT1002_02317	0.81	-0.5
2,585,188	-		MIT1002_02317	0.81	+0.8
2,585,188	-		MIT1002_02317	0.81	-0.2
2,585,188	-		MIT1002_02317	0.81	+1.5
2,585,214	+		MIT1002_02317	0.83	+0.2
2,585,280	-		MIT1002_02317	0.88	+0.0
2,585,394	+				+0.4
2,585,420	+				+0.1
2,585,420	+				+0.4
2,585,428	-				+0.1
2,585,428	-				-0.6
2,585,453	-				-0.6
2,585,453	-				-0.7
2,585,497	-				-2.8
2,585,646	-		MIT1002_02318	0.30	-2.9
2,585,653	+		MIT1002_02318	0.31	+0.7
2,585,653	+		MIT1002_02318	0.31	-0.0
2,585,658	+		MIT1002_02318	0.32	+1.1
2,585,666	+		MIT1002_02318	0.33	+0.8
2,585,807	+		MIT1002_02318	0.54	-0.2
2,585,817	+		MIT1002_02318	0.55	-1.7
2,585,835	+		MIT1002_02318	0.58	-0.5
2,585,882	+		MIT1002_02318	0.65	+0.6
2,585,888	-		MIT1002_02318	0.66	-1.5
2,585,890	-		MIT1002_02318	0.66	+1.9
2,585,890	-		MIT1002_02318	0.66	+1.6
2,585,895	-		MIT1002_02318	0.67	-0.0
2,585,908	+		MIT1002_02318	0.69	+0.8
2,585,932	-		MIT1002_02318	0.72	+1.4
2,585,934	+		MIT1002_02318	0.72	-0.4
2,586,017	-		MIT1002_02318	0.84	+0.7
2,586,035	-		MIT1002_02318	0.87	+0.8
2,586,041	+		MIT1002_02318	0.88	-0.2
2,586,049	-		MIT1002_02318	0.89	+1.7
2,586,049	-		MIT1002_02318	0.89	-0.2
2,586,068	-				+0.0
2,586,087	-				-0.1
2,586,297	-				+0.9
2,586,317	+				+1.1
2,586,345	+				-0.2
2,586,380	+				+1.1
2,586,389	-				+0.9
2,586,402	+				-0.9
2,586,402	+				+0.4
2,586,410	-				+0.9