Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02265

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
2,519,547	-				-1.1
2,519,549	+				+0.2
2,519,557	-				+1.0
2,519,557	-				+0.7
2,519,557	-				+1.7
2,519,561	+				+1.1
2,519,597	-				-0.9
2,519,651	-				-1.7
2,519,698	+				+0.2
2,519,706	-				+1.0
2,519,859	+		MIT1002_02264	0.26	-0.8
2,519,859	+		MIT1002_02264	0.26	-0.7
2,519,859	+		MIT1002_02264	0.26	-0.8
2,519,867	-		MIT1002_02264	0.28	-0.2
2,519,874	-		MIT1002_02264	0.29	-0.2
2,519,930	+		MIT1002_02264	0.38	-0.4
2,519,965	+		MIT1002_02264	0.44	+1.3
2,520,164	+		MIT1002_02264	0.77	-1.0
2,520,164	+		MIT1002_02264	0.77	+0.4
2,520,172	-		MIT1002_02264	0.78	+0.0
2,520,172	-		MIT1002_02264	0.78	-0.5
2,520,172	-		MIT1002_02264	0.78	-2.4
2,520,172	-		MIT1002_02264	0.78	-0.3
2,520,172	-		MIT1002_02264	0.78	-0.3
2,520,182	-		MIT1002_02264	0.80	+3.3
2,520,187	+		MIT1002_02264	0.81	-0.3
2,520,465	+				-0.2
2,520,499	+				-1.1
2,520,507	-				-0.8
2,520,507	-				-0.9
2,520,512	-				-0.2
2,520,639	+				-1.8
2,520,639	-				-0.3
2,520,666	-				+0.0
2,520,677	+				+0.5
2,520,677	+				+0.6
2,520,677	+				-0.5
2,520,677	+				+0.4
2,520,677	+				+1.5
2,520,708	-				+0.1
2,520,843	-		MIT1002_02265	0.12	-1.0
2,520,897	-		MIT1002_02265	0.14	+0.8
2,520,923	+		MIT1002_02265	0.15	+1.8
2,521,085	+		MIT1002_02265	0.22	-0.4
2,521,149	-		MIT1002_02265	0.25	+0.5
2,521,156	-		MIT1002_02265	0.25	-0.7
2,521,193	-		MIT1002_02265	0.26	+1.0
2,521,321	-		MIT1002_02265	0.32	-0.8
2,521,321	-		MIT1002_02265	0.32	-0.2
2,521,398	+		MIT1002_02265	0.35	-0.8
2,521,433	+		MIT1002_02265	0.36	-1.2
2,521,495	-		MIT1002_02265	0.39	+0.5
2,521,510	+		MIT1002_02265	0.39	-0.2
2,521,510	+		MIT1002_02265	0.39	-0.4
2,521,510	+		MIT1002_02265	0.39	-0.2
2,521,518	-		MIT1002_02265	0.40	-0.3
2,521,518	-		MIT1002_02265	0.40	+0.2
2,521,568	+		MIT1002_02265	0.42	+0.2
2,521,576	-		MIT1002_02265	0.42	+0.3
2,521,610	+		MIT1002_02265	0.43	-1.2
2,521,624	-		MIT1002_02265	0.44	-0.8
2,521,630	+		MIT1002_02265	0.44	-0.8
2,521,630	+		MIT1002_02265	0.44	+0.3
2,521,700	+		MIT1002_02265	0.47	+0.8
2,521,751	+		MIT1002_02265	0.49	-0.7
2,521,761	+		MIT1002_02265	0.49	+1.3
2,521,775	-		MIT1002_02265	0.50	+0.5
2,521,781	-		MIT1002_02265	0.50	-0.3
2,521,791	-		MIT1002_02265	0.51	-0.3
2,521,818	+		MIT1002_02265	0.52	-0.7
2,521,834	+		MIT1002_02265	0.52	-1.9
2,521,834	+		MIT1002_02265	0.52	-0.9
2,521,834	+		MIT1002_02265	0.52	-0.9
2,521,842	-		MIT1002_02265	0.53	-1.2
2,521,902	+		MIT1002_02265	0.55	-0.2
2,521,907	+		MIT1002_02265	0.55	+0.6
2,521,993	+		MIT1002_02265	0.59	+0.2
2,522,049	+		MIT1002_02265	0.61	+0.0
2,522,049	+		MIT1002_02265	0.61	-1.0
2,522,051	-		MIT1002_02265	0.61	+0.7
2,522,074	+		MIT1002_02265	0.62	+1.5
2,522,108	+		MIT1002_02265	0.64	+0.7
2,522,135	-		MIT1002_02265	0.65	-0.0
2,522,162	-		MIT1002_02265	0.66	-0.7
2,522,165	-		MIT1002_02265	0.66	+1.3
2,522,206	+		MIT1002_02265	0.67	-1.5
2,522,214	-		MIT1002_02265	0.68	-0.1
2,522,223	+		MIT1002_02265	0.68	-0.7
2,522,231	+		MIT1002_02265	0.68	-0.3
2,522,246	-		MIT1002_02265	0.69	-0.2
2,522,248	+		MIT1002_02265	0.69	-0.7
2,522,256	-		MIT1002_02265	0.70	-0.2
2,522,256	-		MIT1002_02265	0.70	+1.6
2,522,256	-		MIT1002_02265	0.70	-0.1
2,522,284	-		MIT1002_02265	0.71	+1.4
2,522,344	-		MIT1002_02265	0.73	+0.0
2,522,344	-		MIT1002_02265	0.73	-1.5
2,522,369	+		MIT1002_02265	0.74	-0.0
2,522,371	+		MIT1002_02265	0.74	+0.4
2,522,371	+		MIT1002_02265	0.74	-0.2
2,522,379	-		MIT1002_02265	0.74	-0.7
2,522,379	-		MIT1002_02265	0.74	+0.6
2,522,381	+		MIT1002_02265	0.75	-1.7
2,522,440	+		MIT1002_02265	0.77	-0.8
2,522,440	+		MIT1002_02265	0.77	-0.1
2,522,448	-		MIT1002_02265	0.77	-0.3
2,522,448	-		MIT1002_02265	0.77	+0.2
2,522,495	+		MIT1002_02265	0.79	+0.6
2,522,540	-		MIT1002_02265	0.81	+0.9
2,522,602	+		MIT1002_02265	0.84	-1.8
2,522,610	-		MIT1002_02265	0.84	+0.5
2,522,706	-		MIT1002_02265	0.88	-0.4
2,522,708	-		MIT1002_02265	0.88	+1.6
2,522,763	+				+1.3
2,522,818	-				+0.5
2,522,871	+				+0.1
2,522,881	+				+0.3
2,522,881	+				-0.1
2,522,889	-				+0.2
2,523,118	+				-1.3
2,523,147	-				-3.1
2,523,156	+				-3.4
2,523,164	-				-0.7
2,523,176	-				-3.4
2,523,176	-				-1.8
2,523,176	-				-2.2
2,523,176	-				-3.1
2,523,205	-				-4.6
2,523,225	+				-1.4
2,523,233	-				-3.7
2,523,365	-		MIT1002_02266	0.20	-4.6
2,523,495	-		MIT1002_02266	0.30	-0.8
2,523,502	-		MIT1002_02266	0.31	-1.8
2,523,530	-		MIT1002_02266	0.33	-5.2
2,523,627	+		MIT1002_02266	0.41	-2.1
2,523,653	+		MIT1002_02266	0.43	-0.8
2,523,653	+		MIT1002_02266	0.43	-2.6
2,523,661	-		MIT1002_02266	0.44	-4.4
2,523,679	+		MIT1002_02266	0.45	-3.2
2,523,689	+		MIT1002_02266	0.46	-1.8
2,523,818	+		MIT1002_02266	0.56	-3.7
2,523,818	+		MIT1002_02266	0.56	-5.0
2,523,826	-		MIT1002_02266	0.57	-1.2
2,523,887	+		MIT1002_02266	0.62	-4.1
2,523,899	+		MIT1002_02266	0.63	-2.3
2,523,963	+		MIT1002_02266	0.68	-2.2
2,523,963	+		MIT1002_02266	0.68	-3.0
2,523,963	+		MIT1002_02266	0.68	-2.3
2,523,963	+		MIT1002_02266	0.68	-3.8
2,523,966	-		MIT1002_02266	0.68	-4.7
2,523,971	-		MIT1002_02266	0.69	-3.7