Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01841

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
2,050,689	+		MIT1002_01840	0.71	-2.1
2,050,697	-		MIT1002_01840	0.71	-1.7
2,050,731	+		MIT1002_01840	0.73	-1.2
2,050,796	-		MIT1002_01840	0.77	-2.4
2,050,828	+		MIT1002_01840	0.78	-0.7
2,050,851	+		MIT1002_01840	0.80	-1.1
2,050,851	+		MIT1002_01840	0.80	-1.8
2,051,009	+		MIT1002_01840	0.88	-1.0
2,051,097	-				-2.8
2,051,172	+				-1.3
2,051,172	+				+0.2
2,051,178	-				-0.7
2,051,178	-				+0.2
2,051,178	-				-3.0
2,051,178	-				-1.0
2,051,269	-				-1.2
2,051,274	-				+0.3
2,051,288	-				-1.1
2,051,315	-				-0.4
2,051,391	+				+1.4
2,051,399	-				+0.0
2,051,443	-				+0.5
2,051,453	-				+0.5
2,051,714	+		MIT1002_01841	0.14	+0.6
2,051,730	-		MIT1002_01841	0.16	-1.5
2,051,760	+		MIT1002_01841	0.21	+1.8
2,051,768	-		MIT1002_01841	0.23	+0.9
2,051,866	-		MIT1002_01841	0.39	+0.2
2,051,866	-		MIT1002_01841	0.39	-0.1
2,051,895	+		MIT1002_01841	0.43	+1.7
2,051,929	+		MIT1002_01841	0.49	+0.8
2,051,994	+		MIT1002_01841	0.59	-4.1
2,052,016	+		MIT1002_01841	0.63	+0.3
2,052,016	+		MIT1002_01841	0.63	-0.2
2,052,024	-		MIT1002_01841	0.64	-0.4
2,052,065	+		MIT1002_01841	0.71	-0.5
2,052,199	+				-0.0
2,052,418	+				+2.1
2,052,442	-				+0.7
2,052,463	+				+1.4
2,052,463	+				+0.3
2,052,463	+				-0.4
2,052,525	-		MIT1002_01842	0.21	-0.8
2,052,583	-		MIT1002_01842	0.31	+0.6
2,052,584	+		MIT1002_01842	0.31	+0.1
2,052,591	-		MIT1002_01842	0.33	+2.2
2,052,599	-		MIT1002_01842	0.34	+0.1
2,052,667	+		MIT1002_01842	0.46	+1.0
2,052,669	+		MIT1002_01842	0.47	-0.9
2,052,675	-		MIT1002_01842	0.48	+0.3
2,052,677	-		MIT1002_01842	0.48	-0.4
2,052,788	-		MIT1002_01842	0.68	-0.3
2,052,796	-		MIT1002_01842	0.70	+0.1
2,052,908	+				+0.3
2,052,921	-				+0.3
2,052,962	+				-0.5
2,052,969	-				+1.0
2,053,055	+				+1.5
2,053,135	+				-0.5
2,053,143	+				-0.3
2,053,151	+		MIT1002_01843	0.10	-0.2