Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01793

Experiment: monoculture; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01791 and MIT1002_01792 overlap by 1 nucleotidesMIT1002_01792 and MIT1002_01793 are separated by 91 nucleotidesMIT1002_01793 and MIT1002_01794 are separated by 254 nucleotides MIT1002_01791: MIT1002_01791 - hypothetical protein, at 1,992,897 to 1,994,561 _01791 MIT1002_01792: MIT1002_01792 - hypothetical protein, at 1,994,561 to 1,994,980 _01792 MIT1002_01793: MIT1002_01793 - ribosomal protein S12 methylthiotransferase, at 1,995,072 to 1,997,414 _01793 MIT1002_01794: MIT1002_01794 - EVE domain protein, at 1,997,669 to 1,998,133 _01794 Position (kb) 1995 1996 1997 1998Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1994.099 kb on - strand, within MIT1002_01791at 1994.165 kb on + strand, within MIT1002_01791at 1994.165 kb on + strand, within MIT1002_01791at 1994.168 kb on + strand, within MIT1002_01791at 1994.171 kb on - strand, within MIT1002_01791at 1994.208 kb on - strand, within MIT1002_01791at 1994.210 kb on + strand, within MIT1002_01791at 1994.235 kb on - strand, within MIT1002_01791at 1994.387 kb on - strand, within MIT1002_01791at 1994.488 kb on + strandat 1994.496 kb on - strandat 1994.615 kb on + strand, within MIT1002_01792at 1994.669 kb on + strand, within MIT1002_01792at 1994.750 kb on + strand, within MIT1002_01792at 1994.750 kb on + strand, within MIT1002_01792at 1994.758 kb on - strand, within MIT1002_01792at 1994.830 kb on - strand, within MIT1002_01792at 1994.865 kb on - strand, within MIT1002_01792at 1994.892 kb on - strand, within MIT1002_01792at 1994.902 kb on - strand, within MIT1002_01792at 1994.917 kb on + strand, within MIT1002_01792at 1994.956 kb on + strandat 1994.958 kb on + strandat 1994.958 kb on + strandat 1994.980 kb on + strandat 1995.037 kb on + strandat 1995.151 kb on + strandat 1995.185 kb on + strandat 1995.185 kb on + strandat 1995.191 kb on - strandat 1995.191 kb on - strandat 1995.193 kb on - strandat 1995.226 kb on - strandat 1995.239 kb on + strandat 1995.279 kb on + strandat 1995.298 kb on + strandat 1995.379 kb on - strand, within MIT1002_01793at 1995.411 kb on + strand, within MIT1002_01793at 1995.419 kb on - strand, within MIT1002_01793at 1995.460 kb on + strand, within MIT1002_01793at 1995.470 kb on + strand, within MIT1002_01793at 1995.480 kb on + strand, within MIT1002_01793at 1995.562 kb on + strand, within MIT1002_01793at 1995.575 kb on - strand, within MIT1002_01793at 1995.646 kb on - strand, within MIT1002_01793at 1995.702 kb on - strand, within MIT1002_01793at 1995.824 kb on + strand, within MIT1002_01793at 1995.824 kb on + strand, within MIT1002_01793at 1995.832 kb on - strand, within MIT1002_01793at 1995.832 kb on - strand, within MIT1002_01793at 1995.910 kb on + strand, within MIT1002_01793at 1995.982 kb on + strand, within MIT1002_01793at 1995.990 kb on - strand, within MIT1002_01793at 1995.994 kb on + strand, within MIT1002_01793at 1996.002 kb on - strand, within MIT1002_01793at 1996.033 kb on - strand, within MIT1002_01793at 1996.054 kb on + strand, within MIT1002_01793at 1996.062 kb on - strand, within MIT1002_01793at 1996.062 kb on - strand, within MIT1002_01793at 1996.062 kb on - strand, within MIT1002_01793at 1996.062 kb on - strand, within MIT1002_01793at 1996.091 kb on + strand, within MIT1002_01793at 1996.136 kb on - strand, within MIT1002_01793at 1996.136 kb on - strand, within MIT1002_01793at 1996.141 kb on - strand, within MIT1002_01793at 1996.185 kb on + strand, within MIT1002_01793at 1996.227 kb on + strand, within MIT1002_01793at 1996.302 kb on + strand, within MIT1002_01793at 1996.302 kb on + strand, within MIT1002_01793at 1996.302 kb on + strand, within MIT1002_01793at 1996.310 kb on - strand, within MIT1002_01793at 1996.310 kb on - strand, within MIT1002_01793at 1996.310 kb on - strand, within MIT1002_01793at 1996.312 kb on + strand, within MIT1002_01793at 1996.312 kb on + strand, within MIT1002_01793at 1996.318 kb on + strand, within MIT1002_01793at 1996.320 kb on - strand, within MIT1002_01793at 1996.320 kb on - strand, within MIT1002_01793at 1996.426 kb on - strand, within MIT1002_01793at 1996.502 kb on - strand, within MIT1002_01793at 1996.543 kb on + strand, within MIT1002_01793at 1996.551 kb on - strand, within MIT1002_01793at 1996.573 kb on + strand, within MIT1002_01793at 1996.581 kb on - strand, within MIT1002_01793at 1996.692 kb on + strand, within MIT1002_01793at 1996.706 kb on + strand, within MIT1002_01793at 1996.714 kb on - strand, within MIT1002_01793at 1996.714 kb on - strand, within MIT1002_01793at 1996.748 kb on + strand, within MIT1002_01793at 1996.782 kb on + strand, within MIT1002_01793at 1996.790 kb on - strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.871 kb on + strand, within MIT1002_01793at 1996.874 kb on - strand, within MIT1002_01793at 1996.879 kb on - strand, within MIT1002_01793at 1996.879 kb on - strand, within MIT1002_01793at 1996.879 kb on - strand, within MIT1002_01793at 1996.879 kb on - strand, within MIT1002_01793at 1996.879 kb on - strand, within MIT1002_01793at 1996.879 kb on - strand, within MIT1002_01793at 1996.879 kb on - strand, within MIT1002_01793at 1996.879 kb on - strand, within MIT1002_01793at 1996.954 kb on - strand, within MIT1002_01793at 1996.960 kb on + strand, within MIT1002_01793at 1996.960 kb on + strand, within MIT1002_01793at 1996.960 kb on + strand, within MIT1002_01793at 1996.968 kb on - strand, within MIT1002_01793at 1996.968 kb on - strand, within MIT1002_01793at 1996.968 kb on - strand, within MIT1002_01793at 1996.968 kb on - strand, within MIT1002_01793at 1996.968 kb on - strand, within MIT1002_01793at 1996.978 kb on - strand, within MIT1002_01793at 1996.992 kb on + strand, within MIT1002_01793at 1997.015 kb on - strand, within MIT1002_01793at 1997.074 kb on + strand, within MIT1002_01793at 1997.082 kb on - strand, within MIT1002_01793at 1997.141 kb on + strand, within MIT1002_01793at 1997.171 kb on - strand, within MIT1002_01793at 1997.171 kb on - strand, within MIT1002_01793at 1997.226 kb on - strandat 1997.257 kb on - strandat 1997.297 kb on + strandat 1997.326 kb on - strandat 1997.344 kb on + strandat 1997.345 kb on + strandat 1997.353 kb on - strandat 1997.423 kb on + strandat 1997.475 kb on - strandat 1997.494 kb on + strandat 1997.494 kb on + strandat 1997.494 kb on + strandat 1997.502 kb on - strandat 1997.510 kb on + strandat 1997.511 kb on + strandat 1997.512 kb on - strandat 1997.519 kb on - strandat 1997.519 kb on - strandat 1997.648 kb on - strandat 1997.743 kb on - strand, within MIT1002_01794at 1997.796 kb on + strand, within MIT1002_01794at 1997.816 kb on + strand, within MIT1002_01794at 1997.824 kb on - strand, within MIT1002_01794at 1997.870 kb on + strand, within MIT1002_01794at 1997.902 kb on + strand, within MIT1002_01794at 1997.902 kb on + strand, within MIT1002_01794at 1997.902 kb on + strand, within MIT1002_01794at 1997.902 kb on + strand, within MIT1002_01794at 1997.910 kb on - strand, within MIT1002_01794at 1997.910 kb on - strand, within MIT1002_01794at 1997.910 kb on - strand, within MIT1002_01794at 1997.910 kb on - strand, within MIT1002_01794at 1997.944 kb on + strand, within MIT1002_01794at 1997.952 kb on - strand, within MIT1002_01794at 1998.033 kb on + strand, within MIT1002_01794at 1998.063 kb on + strand, within MIT1002_01794at 1998.084 kb on + strand, within MIT1002_01794at 1998.106 kb on + strandat 1998.117 kb on - strandat 1998.117 kb on - strandat 1998.206 kb on + strandat 1998.280 kb on - strandat 1998.338 kb on + strandat 1998.338 kb on + strandat 1998.338 kb on + strandat 1998.338 kb on + strandat 1998.338 kb on + strandat 1998.346 kb on - strandat 1998.347 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3
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1,994,099 - MIT1002_01791 0.72 -0.3
1,994,165 + MIT1002_01791 0.76 -0.7
1,994,165 + MIT1002_01791 0.76 -2.8
1,994,168 + MIT1002_01791 0.76 -0.1
1,994,171 - MIT1002_01791 0.77 -0.5
1,994,208 - MIT1002_01791 0.79 -1.0
1,994,210 + MIT1002_01791 0.79 +0.2
1,994,235 - MIT1002_01791 0.80 -0.1
1,994,387 - MIT1002_01791 0.89 -0.4
1,994,488 + -1.5
1,994,496 - +0.2
1,994,615 + MIT1002_01792 0.13 -1.4
1,994,669 + MIT1002_01792 0.26 -1.2
1,994,750 + MIT1002_01792 0.45 +0.7
1,994,750 + MIT1002_01792 0.45 +2.3
1,994,758 - MIT1002_01792 0.47 +0.2
1,994,830 - MIT1002_01792 0.64 -0.8
1,994,865 - MIT1002_01792 0.72 +0.2
1,994,892 - MIT1002_01792 0.79 -1.7
1,994,902 - MIT1002_01792 0.81 +0.2
1,994,917 + MIT1002_01792 0.85 -0.3
1,994,956 + -0.8
1,994,958 + +0.1
1,994,958 + -1.3
1,994,980 + +0.1
1,995,037 + -0.2
1,995,151 + -0.0
1,995,185 + -1.1
1,995,185 + -2.4
1,995,191 - +0.3
1,995,191 - -0.0
1,995,193 - +1.1
1,995,226 - +0.1
1,995,239 + -0.4
1,995,279 + +0.2
1,995,298 + +1.2
1,995,379 - MIT1002_01793 0.13 +0.2
1,995,411 + MIT1002_01793 0.14 -0.6
1,995,419 - MIT1002_01793 0.15 +0.2
1,995,460 + MIT1002_01793 0.17 -0.1
1,995,470 + MIT1002_01793 0.17 +1.3
1,995,480 + MIT1002_01793 0.17 -0.3
1,995,562 + MIT1002_01793 0.21 +0.7
1,995,575 - MIT1002_01793 0.21 +0.1
1,995,646 - MIT1002_01793 0.24 +0.5
1,995,702 - MIT1002_01793 0.27 -1.5
1,995,824 + MIT1002_01793 0.32 -0.6
1,995,824 + MIT1002_01793 0.32 +1.2
1,995,832 - MIT1002_01793 0.32 +1.4
1,995,832 - MIT1002_01793 0.32 -0.9
1,995,910 + MIT1002_01793 0.36 +1.8
1,995,982 + MIT1002_01793 0.39 -0.4
1,995,990 - MIT1002_01793 0.39 -1.3
1,995,994 + MIT1002_01793 0.39 -0.3
1,996,002 - MIT1002_01793 0.40 -2.5
1,996,033 - MIT1002_01793 0.41 -0.0
1,996,054 + MIT1002_01793 0.42 -0.8
1,996,062 - MIT1002_01793 0.42 +0.1
1,996,062 - MIT1002_01793 0.42 +0.2
1,996,062 - MIT1002_01793 0.42 +0.7
1,996,062 - MIT1002_01793 0.42 +0.8
1,996,091 + MIT1002_01793 0.43 -0.0
1,996,136 - MIT1002_01793 0.45 +0.8
1,996,136 - MIT1002_01793 0.45 +1.7
1,996,141 - MIT1002_01793 0.46 -0.4
1,996,185 + MIT1002_01793 0.48 +1.0
1,996,227 + MIT1002_01793 0.49 -0.3
1,996,302 + MIT1002_01793 0.52 +0.3
1,996,302 + MIT1002_01793 0.52 -1.3
1,996,302 + MIT1002_01793 0.52 -0.7
1,996,310 - MIT1002_01793 0.53 -0.2
1,996,310 - MIT1002_01793 0.53 -1.0
1,996,310 - MIT1002_01793 0.53 +1.6
1,996,312 + MIT1002_01793 0.53 -0.1
1,996,312 + MIT1002_01793 0.53 -0.7
1,996,318 + MIT1002_01793 0.53 +0.2
1,996,320 - MIT1002_01793 0.53 +0.5
1,996,320 - MIT1002_01793 0.53 +1.7
1,996,426 - MIT1002_01793 0.58 +1.5
1,996,502 - MIT1002_01793 0.61 -0.2
1,996,543 + MIT1002_01793 0.63 +0.2
1,996,551 - MIT1002_01793 0.63 +0.0
1,996,573 + MIT1002_01793 0.64 +0.1
1,996,581 - MIT1002_01793 0.64 -0.9
1,996,692 + MIT1002_01793 0.69 +0.1
1,996,706 + MIT1002_01793 0.70 -0.6
1,996,714 - MIT1002_01793 0.70 +0.0
1,996,714 - MIT1002_01793 0.70 +0.6
1,996,748 + MIT1002_01793 0.72 +0.7
1,996,782 + MIT1002_01793 0.73 -0.4
1,996,790 - MIT1002_01793 0.73 -0.0
1,996,871 + MIT1002_01793 0.77 -0.2
1,996,871 + MIT1002_01793 0.77 +0.2
1,996,871 + MIT1002_01793 0.77 -0.8
1,996,871 + MIT1002_01793 0.77 -0.1
1,996,871 + MIT1002_01793 0.77 -0.4
1,996,871 + MIT1002_01793 0.77 -0.7
1,996,871 + MIT1002_01793 0.77 -0.2
1,996,871 + MIT1002_01793 0.77 -0.2
1,996,871 + MIT1002_01793 0.77 +0.3
1,996,871 + MIT1002_01793 0.77 +0.2
1,996,871 + MIT1002_01793 0.77 +0.7
1,996,871 + MIT1002_01793 0.77 +0.3
1,996,874 - MIT1002_01793 0.77 +0.6
1,996,879 - MIT1002_01793 0.77 +0.2
1,996,879 - MIT1002_01793 0.77 -1.2
1,996,879 - MIT1002_01793 0.77 +2.4
1,996,879 - MIT1002_01793 0.77 +1.5
1,996,879 - MIT1002_01793 0.77 +0.3
1,996,879 - MIT1002_01793 0.77 -1.2
1,996,879 - MIT1002_01793 0.77 -0.1
1,996,879 - MIT1002_01793 0.77 -1.4
1,996,954 - MIT1002_01793 0.80 -1.2
1,996,960 + MIT1002_01793 0.81 +0.5
1,996,960 + MIT1002_01793 0.81 +1.2
1,996,960 + MIT1002_01793 0.81 -0.3
1,996,968 - MIT1002_01793 0.81 +0.2
1,996,968 - MIT1002_01793 0.81 +0.8
1,996,968 - MIT1002_01793 0.81 +1.4
1,996,968 - MIT1002_01793 0.81 -0.3
1,996,968 - MIT1002_01793 0.81 +0.2
1,996,978 - MIT1002_01793 0.81 -0.1
1,996,992 + MIT1002_01793 0.82 -1.6
1,997,015 - MIT1002_01793 0.83 +0.0
1,997,074 + MIT1002_01793 0.85 +0.7
1,997,082 - MIT1002_01793 0.86 -0.5
1,997,141 + MIT1002_01793 0.88 +0.4
1,997,171 - MIT1002_01793 0.90 +0.3
1,997,171 - MIT1002_01793 0.90 +1.1
1,997,226 - +0.3
1,997,257 - -0.0
1,997,297 + -0.2
1,997,326 - -1.5
1,997,344 + -0.5
1,997,345 + -1.1
1,997,353 - -0.9
1,997,423 + +0.2
1,997,475 - -0.2
1,997,494 + -0.6
1,997,494 + -0.2
1,997,494 + +1.0
1,997,502 - +0.9
1,997,510 + -0.4
1,997,511 + -0.5
1,997,512 - -0.0
1,997,519 - -0.8
1,997,519 - -1.8
1,997,648 - +0.2
1,997,743 - MIT1002_01794 0.16 +0.7
1,997,796 + MIT1002_01794 0.27 +1.0
1,997,816 + MIT1002_01794 0.32 -0.8
1,997,824 - MIT1002_01794 0.33 +0.1
1,997,870 + MIT1002_01794 0.43 +0.5
1,997,902 + MIT1002_01794 0.50 +2.5
1,997,902 + MIT1002_01794 0.50 -0.8
1,997,902 + MIT1002_01794 0.50 -0.3
1,997,902 + MIT1002_01794 0.50 +0.4
1,997,910 - MIT1002_01794 0.52 +0.3
1,997,910 - MIT1002_01794 0.52 +0.2
1,997,910 - MIT1002_01794 0.52 -0.6
1,997,910 - MIT1002_01794 0.52 -0.1
1,997,944 + MIT1002_01794 0.59 -0.4
1,997,952 - MIT1002_01794 0.61 -0.0
1,998,033 + MIT1002_01794 0.78 +1.5
1,998,063 + MIT1002_01794 0.85 -0.3
1,998,084 + MIT1002_01794 0.89 -0.3
1,998,106 + -1.0
1,998,117 - -0.5
1,998,117 - +1.0
1,998,206 + -0.5
1,998,280 - +0.1
1,998,338 + -0.6
1,998,338 + -0.1
1,998,338 + +0.5
1,998,338 + -0.3
1,998,338 + +0.3
1,998,346 - +0.8
1,998,347 + +0.9

Or see this region's nucleotide sequence