Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01227

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
1,349,327	-		MIT1002_01224	0.75	-0.8
1,349,366	+		MIT1002_01224	0.84	-1.2
1,349,376	-		MIT1002_01224	0.86	+0.8
1,349,427	-				-0.1
1,349,439	+				+1.2
1,349,447	-				+1.9
1,349,447	-				+0.3
1,349,447	-				+1.3
1,349,449	+				+0.3
1,349,494	+				+1.6
1,349,494	+				+0.6
1,349,502	-				+0.2
1,349,502	-				+1.3
1,349,522	-				-0.2
1,349,604	-		MIT1002_01225	0.16	-0.6
1,349,616	-		MIT1002_01225	0.19	-0.6
1,349,729	+		MIT1002_01225	0.46	+0.1
1,349,754	-		MIT1002_01225	0.52	-0.2
1,349,836	-		MIT1002_01225	0.72	+0.1
1,349,886	+		MIT1002_01225	0.84	-0.3
1,350,018	-				+0.5
1,350,018	-				-1.0
1,350,050	-				-1.9
1,350,183	-		MIT1002_01226	0.41	-0.1
1,350,188	-		MIT1002_01226	0.45	-0.9
1,350,227	+		MIT1002_01226	0.76	+1.4
1,350,235	-		MIT1002_01226	0.83	+1.6
1,350,245	-				+0.5
1,350,263	+				+0.3
1,350,273	+				+0.3
1,350,385	+		MIT1002_01227	0.15	+1.3
1,350,424	+		MIT1002_01227	0.21	+0.8
1,350,427	-		MIT1002_01227	0.22	+1.5
1,350,449	-		MIT1002_01227	0.25	+0.8
1,350,465	+		MIT1002_01227	0.27	-0.7
1,350,519	+		MIT1002_01227	0.36	-0.0
1,350,528	-		MIT1002_01227	0.37	-0.2
1,350,528	-		MIT1002_01227	0.37	-1.6
1,350,649	-		MIT1002_01227	0.56	+0.8
1,350,649	-		MIT1002_01227	0.56	+1.6
1,350,661	+		MIT1002_01227	0.58	+0.0
1,350,755	+		MIT1002_01227	0.72	+0.9
1,350,763	-		MIT1002_01227	0.73	-0.7
1,350,773	-		MIT1002_01227	0.75	+0.4
1,350,784	+		MIT1002_01227	0.76	-0.4
1,350,784	+		MIT1002_01227	0.76	+0.2
1,350,909	-				-0.4
1,350,916	-				-0.5
1,350,950	+				-1.0
1,351,023	-				+0.6
1,351,288	+		MIT1002_01228	0.21	-1.2
1,351,373	+		MIT1002_01228	0.30	+1.2
1,351,373	+		MIT1002_01228	0.30	-1.0
1,351,417	+		MIT1002_01228	0.35	-1.2
1,351,592	+		MIT1002_01228	0.54	+0.4
1,351,642	+		MIT1002_01228	0.59	+1.2
1,351,642	+		MIT1002_01228	0.59	+0.2
1,351,745	+		MIT1002_01228	0.70	-0.5
1,351,745	+		MIT1002_01228	0.70	+0.3
1,351,745	+		MIT1002_01228	0.70	+0.6
1,351,803	+		MIT1002_01228	0.76	-0.6
1,351,803	+		MIT1002_01228	0.76	+0.8
1,351,803	+		MIT1002_01228	0.76	-1.1
1,351,813	+		MIT1002_01228	0.77	-1.1