Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01181 and MIT1002_01182 are separated by 248 nucleotides MIT1002_01182 and MIT1002_01183 overlap by 20 nucleotides MIT1002_01183 and MIT1002_01184 are separated by 208 nucleotides
MIT1002_01181: MIT1002_01181 - Inner membrane transport protein YdhP, at 1,295,543 to 1,296,742
_01181
MIT1002_01182: MIT1002_01182 - hypothetical protein, at 1,296,991 to 1,297,206
_01182
MIT1002_01183: MIT1002_01183 - hypothetical protein, at 1,297,187 to 1,297,384
_01183
MIT1002_01184: MIT1002_01184 - Transposase, at 1,297,593 to 1,298,282
_01184
Position (kb) 1297
1298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1296.251 kb on + strand, within MIT1002_01181 at 1296.258 kb on + strand, within MIT1002_01181 at 1296.271 kb on + strand, within MIT1002_01181 at 1296.401 kb on - strand, within MIT1002_01181 at 1296.405 kb on + strand, within MIT1002_01181 at 1296.437 kb on - strand, within MIT1002_01181 at 1296.478 kb on + strand, within MIT1002_01181 at 1296.481 kb on - strand, within MIT1002_01181 at 1296.486 kb on - strand, within MIT1002_01181 at 1296.486 kb on - strand, within MIT1002_01181 at 1296.512 kb on - strand, within MIT1002_01181 at 1296.536 kb on + strand, within MIT1002_01181 at 1296.536 kb on + strand, within MIT1002_01181 at 1296.544 kb on - strand, within MIT1002_01181 at 1296.551 kb on + strand, within MIT1002_01181 at 1296.576 kb on + strand, within MIT1002_01181 at 1296.594 kb on - strand, within MIT1002_01181 at 1296.599 kb on - strand, within MIT1002_01181 at 1296.599 kb on - strand, within MIT1002_01181 at 1296.614 kb on - strand, within MIT1002_01181 at 1296.684 kb on + strand at 1296.684 kb on + strand at 1296.684 kb on + strand at 1296.692 kb on - strand at 1296.700 kb on + strand at 1296.754 kb on - strand at 1296.802 kb on + strand at 1296.802 kb on + strand at 1296.802 kb on + strand at 1296.802 kb on + strand at 1296.802 kb on + strand at 1296.802 kb on + strand at 1296.802 kb on + strand at 1296.802 kb on + strand at 1296.810 kb on - strand at 1296.810 kb on - strand at 1296.810 kb on - strand at 1296.810 kb on - strand at 1296.810 kb on - strand at 1296.810 kb on - strand at 1296.810 kb on - strand at 1296.824 kb on + strand at 1296.975 kb on + strand at 1296.975 kb on + strand at 1296.975 kb on + strand at 1296.975 kb on + strand at 1296.977 kb on + strand at 1296.983 kb on - strand at 1297.074 kb on + strand, within MIT1002_01182 at 1297.076 kb on + strand, within MIT1002_01182 at 1297.081 kb on - strand, within MIT1002_01182 at 1297.103 kb on + strand, within MIT1002_01182 at 1297.252 kb on + strand, within MIT1002_01183 at 1297.252 kb on + strand, within MIT1002_01183 at 1297.296 kb on + strand, within MIT1002_01183 at 1297.337 kb on - strand, within MIT1002_01183 at 1297.402 kb on - strand at 1297.406 kb on + strand at 1297.414 kb on - strand at 1297.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 1,296,251 + MIT1002_01181 0.59 -0.0 1,296,258 + MIT1002_01181 0.60 -0.5 1,296,271 + MIT1002_01181 0.61 +0.1 1,296,401 - MIT1002_01181 0.71 -0.3 1,296,405 + MIT1002_01181 0.72 -0.0 1,296,437 - MIT1002_01181 0.74 -1.0 1,296,478 + MIT1002_01181 0.78 +1.1 1,296,481 - MIT1002_01181 0.78 -0.3 1,296,486 - MIT1002_01181 0.79 -0.7 1,296,486 - MIT1002_01181 0.79 +0.3 1,296,512 - MIT1002_01181 0.81 +0.8 1,296,536 + MIT1002_01181 0.83 +0.3 1,296,536 + MIT1002_01181 0.83 +0.0 1,296,544 - MIT1002_01181 0.83 -1.7 1,296,551 + MIT1002_01181 0.84 +0.6 1,296,576 + MIT1002_01181 0.86 +2.5 1,296,594 - MIT1002_01181 0.88 -1.1 1,296,599 - MIT1002_01181 0.88 +0.4 1,296,599 - MIT1002_01181 0.88 -1.1 1,296,614 - MIT1002_01181 0.89 -1.3 1,296,684 + +1.2 1,296,684 + +0.4 1,296,684 + +0.9 1,296,692 - -0.9 1,296,700 + -0.0 1,296,754 - -0.3 1,296,802 + -0.9 1,296,802 + -0.1 1,296,802 + +0.3 1,296,802 + -0.8 1,296,802 + +1.4 1,296,802 + -0.5 1,296,802 + +1.2 1,296,802 + +1.4 1,296,810 - -1.2 1,296,810 - -0.2 1,296,810 - -0.4 1,296,810 - -0.7 1,296,810 - +0.5 1,296,810 - +1.3 1,296,810 - -0.9 1,296,824 + +2.4 1,296,975 + +0.3 1,296,975 + +0.4 1,296,975 + -3.5 1,296,975 + -0.2 1,296,977 + -0.1 1,296,983 - -1.7 1,297,074 + MIT1002_01182 0.38 -1.4 1,297,076 + MIT1002_01182 0.39 -0.4 1,297,081 - MIT1002_01182 0.42 -0.3 1,297,103 + MIT1002_01182 0.52 -0.5 1,297,252 + MIT1002_01183 0.33 -0.7 1,297,252 + MIT1002_01183 0.33 +0.2 1,297,296 + MIT1002_01183 0.55 -0.6 1,297,337 - MIT1002_01183 0.76 -0.6 1,297,402 - +2.0 1,297,406 + +0.6 1,297,414 - +0.2 1,297,414 - +0.1
Or see this region's nucleotide sequence