Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00958

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
1,063,684	+		MIT1002_00957	0.29	-0.1
1,063,684	+		MIT1002_00957	0.29	-0.9
1,063,689	+		MIT1002_00957	0.29	+0.3
1,063,689	+		MIT1002_00957	0.29	-0.6
1,063,692	-		MIT1002_00957	0.30	+0.9
1,063,713	-		MIT1002_00957	0.31	-0.1
1,063,720	+		MIT1002_00957	0.32	+1.6
1,063,803	-		MIT1002_00957	0.39	+0.1
1,063,803	-		MIT1002_00957	0.39	+0.1
1,063,803	-		MIT1002_00957	0.39	+0.3
1,063,883	+		MIT1002_00957	0.46	+0.9
1,063,889	+		MIT1002_00957	0.46	-1.1
1,063,965	+		MIT1002_00957	0.52	-0.8
1,063,979	+		MIT1002_00957	0.54	+0.2
1,063,990	+		MIT1002_00957	0.55	+0.4
1,064,030	-		MIT1002_00957	0.58	+0.9
1,064,030	-		MIT1002_00957	0.58	+0.4
1,064,111	+		MIT1002_00957	0.65	-0.2
1,064,163	-		MIT1002_00957	0.69	+0.7
1,064,174	+		MIT1002_00957	0.70	-0.6
1,064,180	-		MIT1002_00957	0.70	-0.1
1,064,232	+		MIT1002_00957	0.75	+0.4
1,064,265	+		MIT1002_00957	0.78	+0.4
1,064,283	+		MIT1002_00957	0.79	+0.5
1,064,340	+		MIT1002_00957	0.84	+0.1
1,064,343	+		MIT1002_00957	0.84	+0.4
1,064,343	+		MIT1002_00957	0.84	-0.0
1,064,343	+		MIT1002_00957	0.84	-0.0
1,064,351	-		MIT1002_00957	0.85	+1.3
1,064,351	-		MIT1002_00957	0.85	+0.0
1,064,351	-		MIT1002_00957	0.85	-0.5
1,064,365	+		MIT1002_00957	0.86	-1.1
1,064,373	-		MIT1002_00957	0.87	+0.7
1,064,407	-		MIT1002_00957	0.89	-0.2
1,064,410	+		MIT1002_00957	0.90	-0.4
1,064,410	+		MIT1002_00957	0.90	+0.3
1,064,418	-				-0.7
1,064,418	-				+0.9
1,064,418	-				-0.2
1,064,438	-				+0.7
1,064,438	-				-1.3
1,064,438	-				+0.9
1,064,579	+				-0.3
1,064,651	-				+0.8
1,064,675	+				+0.2
1,064,682	+				-0.5
1,064,735	+		MIT1002_00958	0.20	-0.9
1,064,748	-		MIT1002_00958	0.25	+0.6
1,064,797	+		MIT1002_00958	0.40	-0.9
1,064,945	+		MIT1002_00958	0.86	-0.2
1,065,017	+				+0.5
1,065,034	+				-2.3
1,065,034	+				+1.4
1,065,034	+				+0.1
1,065,034	+				-0.3
1,065,042	-				-0.4
1,065,042	-				+0.2
1,065,057	-				+0.9
1,065,119	+				-1.0
1,065,125	+				-2.9
1,065,127	-				+1.0
1,065,140	+				+0.1
1,065,171	-				+0.4
1,065,228	+				-0.2
1,065,236	-				+0.0
1,065,290	+		MIT1002_00959	0.12	+0.4
1,065,328	-		MIT1002_00959	0.13	-0.1
1,065,340	-		MIT1002_00959	0.14	+1.1
1,065,438	+		MIT1002_00959	0.18	+1.2
1,065,468	-		MIT1002_00959	0.19	+1.6
1,065,505	+		MIT1002_00959	0.20	+1.3
1,065,582	+		MIT1002_00959	0.24	-0.2
1,065,592	+		MIT1002_00959	0.24	-0.4
1,065,662	+		MIT1002_00959	0.27	+0.3
1,065,704	+		MIT1002_00959	0.29	-0.1
1,065,713	-		MIT1002_00959	0.29	+0.4
1,065,728	+		MIT1002_00959	0.30	-0.1
1,065,781	-		MIT1002_00959	0.32	+0.7
1,065,843	-		MIT1002_00959	0.34	+0.3
1,065,882	+		MIT1002_00959	0.36	-0.1
1,065,900	-		MIT1002_00959	0.36	+1.4
1,065,912	-		MIT1002_00959	0.37	+0.1